Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11 306 3e-78 seq13 116 3e-21 seq12 93.3 4e-14 >seq11 Length=4934405 Score = 306 bits (338), Expect = 3e-78 Identities = 645/958 (67%), Gaps = 8/958 (1%) Strand=Plus/Plus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||||| |||||||| ||||| || || ||||| || || |||||| | ||| || Sbjct 3280374 GGCGAGGGAGGCAAGGTTGCAGACAGCAACCTCATCAGGGGCACAGTACTCGATAATCTC 3280433 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 ||| || || ||| | || || || | || |||||||||| || || ||||| Sbjct 3280434 GGTGCAAAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 3280493 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 |||||||||||||||| | || |||| ||||| ||| | ||||| ||| || Sbjct 3280494 GTGATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCAGTCTGAGCCTCGAGGATGGCATA 3280553 Query 23200 CCACATAGTCTGAGCGTGAACA--CGT-CG-CACGTACCTGCCTTCTTCCTCGTACTTTT 23255 ||| | |||| || | | | | || | | |||| ||||||| | ||||| | Sbjct 3280554 CCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTACCAGCCTTCT----CATACTTCT 3280609 Query 23256 GGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGAC 23315 ||||| || || || || ||||||| |||||||| |||||||| | | | |||| Sbjct 3280610 CGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCGGGACACTCGTTGGGAC 3280669 Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 |||||||| |||| || || || || || |||| || ||||| || ||||| | Sbjct 3280670 ACATGAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGA 3280729 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 |||| |||||| ||||| ||||| |||||||| |||||| |||||| || || | Sbjct 3280730 GAGCCAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAA 3280789 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || || || || || ||||| ||||| ||||| | |||||| || || |||| || Sbjct 3280790 GGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCT 3280849 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 ||||||| |||||||||||||| ||||| ||||||||| | || | ||||| || | Sbjct 3280850 TATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGGAGCATGGGGGTAA 3280909 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAA 23615 ||||||||| | ||| || || | ||||| | || || | ||| | Sbjct 3280910 CACCGTTGGAGGTACCGTTGGTACCGGCGATGTAAGAACCAGTGGCACGGATTCGGTGCA 3280969 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 ||| | || || || || || || || ||||| || || || ||||| || | Sbjct 3280970 CGTTCAGGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGAGTATCAT 3281029 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 | || ||||| || |||||||| || | |||| | ||| || || || | || | | Sbjct 3281030 AAATACCCTCAATACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGAGAGCTGGGGCT 3281089 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 ||| ||| | || ||| || || ||| |||||| || ||| | ||||||| | Sbjct 3281090 GGGGGGTACCCGCATTGAAGAGGGTGGGGGAGGCGTGAGTGAAGAACTTGCTCGACATGA 3281149 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 | ||||| || |||| | | ||||||| || || || |||| || || |||| Sbjct 3281150 GGTTGTAAGTCTCGAGGACACGCTCAATGTTGTCACCCCAGATGCCGACAGCCACACGCA 3281209 Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915 | ||||||| || || | ||| || | ||| | ||| |||| || || || || | Sbjct 3281210 TGATCATGTGCTGGGGGCGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAAGATCGCT 3281269 Query 23916 GCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | || || || ||||| || | || | |||||||| || | || ||||| || Sbjct 3281270 CAAGGGTCTTGAAGCCAAAGTATTGGTATTGGAAGTCACGGTCATAGACAATGGCGGA 3281327 >seq13 Length=4347623 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || || || || |||||| | || || ||| | ||| Sbjct 2711795 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAATCATCC 2711854 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||| |||||||| | || || ||||| Sbjct 2711855 GACACGATCGATAACGTGAAGTCGAAGATTCAGGATAAGGAAGGAATTCCTCCTGACCAA 2711914 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||||||||| || | || ||| ||| | ||||| || ||| Sbjct 2711915 CAGCGACTTATCTTCGCTGGCAAGCAACTCGAGGACGGCCGAACTCTCAGCGACTACAAC 2711974 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || ||||| || ||||| ||| | ||| | || |||| Sbjct 2711975 ATCCAGAAGGAGTCTACTCTGCACCTGGTTCTTCGTCTGCGTGGTGGTA 2712023 >seq12 Length=8749402 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || || || || |||||| | || || || | Sbjct 4927205 AAGATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACCCTTGAGGTGGAGTCT 4927264 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 4927265 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 4927324 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || |||||||| ||| | || || || ||||||| || Sbjct 4927325 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 4927384 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || || || || ||||| || | ||| | || ||| ||||| Sbjct 4927385 AACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTCCGCCTGCGTGGTGGTGCCAAGAAG 4927444 Query 31426 CG 31427 || Sbjct 4927445 CG 4927446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766305274640