Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10 134 2e-26 seq11 87.8 2e-12 >seq10 Length=5928648 Score = 134 bits (148), Expect = 2e-26 Identities = 367/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| ||||||||||| | | ||||| ||||| || || || || Sbjct 4470658 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGATATTAACTCGTTAGAGAAGGTCAGA 4470717 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || |||||||| || ||||| || || || ||||| | || || ||| Sbjct 4470718 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAAAAG 4470777 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGT 42241 || || || || || || ||||||| || | || || || | | |||| || Sbjct 4470778 ATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGTCCTGG 4470837 Query 42242 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | || ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 4470838 ATCCATCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTT 4470896 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 ||||| ||| || | | || || | ||| || || || | || || | Sbjct 4470897 GAAGAGGTAGGTTCGCTGGGAAGGCTCCTTGATATAGGTGTCAATGAGCAGGGAGTAGGT 4470956 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || || || ||||| || || ||||| || |||||||| |||| ||||||| | Sbjct 4470957 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGAT 4471016 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 ||| || || | ||||| ||| | | || ||||| || || |||||| ||| || Sbjct 4471017 CTGGACCTCGCCGCTGAATCGCTCAACAAGGTTCTCGTTGACGATGCCGTCAGAGGCGGC 4471076 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCA 42537 ||| || || | | || || || | | ||||| | || | || ||||| Sbjct 4471077 AAAGAAGGCAAGAATGTGAGAGATGAAGAACTGCTCGTCGGAGGTCAGGCGGTTGTTCCA 4471136 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | || ||| || || | ||| | || || | ||||| || || || || ||||| Sbjct 4471137 GTCGTGGAGATCCTTGGACAGATCAATCTCCTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 4471196 Query 42598 TTTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 4471197 CTTGTACATCTGCCAGAT 4471214 >seq11 Length=4934405 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 |||||||||||||||| | || || | ||| || || |||||||||||||| || ||| Sbjct 3279469 GTAAACTGAATGGGAGCAGCGGCAGCCTGCGTTCGCAGGTAGTACATGCCTGTCTTCAGA 3279528 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 ||||| |||| ||| ||| ||||| || || | ||| | | || || ||| Sbjct 3279529 CCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGGTCCTTCATG 3279588 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 70973 || || || | ||||| ||||| |||||||| || | ||| || ||||| Sbjct 3279589 TGGATGTTGAGAGACTGGGACTGATCAATGAAGGCACCTCGGTCGGCCGCCAT 3279641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139057382920