Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq13 127 2e-24 seq12 102 7e-17 seq17 91.5 1e-13 >seq13 Length=4347623 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || ||||||| || || || ||| | Sbjct 2712023 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACTCTGGAGGTCGAGTCCAGC 2712082 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || ||||| |||||||||||||| || ||||| || Sbjct 2712083 GATACTATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAG 2712142 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| || || ||| | |||||| |||||| |||| || |||||| Sbjct 2712143 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTCTCTGACTACAAC 2712202 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||| ||| Sbjct 2712203 ATTCAGAAGGAATCGACC 2712220 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || ||||| | |||| || | ||| | |||| | Sbjct 2711591 ACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCGACAACGTCAAGTCA 2711650 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || ||||| || || || || ||||| ||||| Sbjct 2711651 AAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAGCAGCGCCTGATCTTTGCTGGCAAG 2711710 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||||| || |||| ||||||||||| || || |||||| | || Sbjct 2711711 CAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATTCAGAAGGAGTCCACCCTCCAC 2711770 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| | || | ||||| ||| Sbjct 2711771 CTCGTTCTCCGCCTTCGCGGTGGT 2711794 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || || | |||||| | ||| || |||| Sbjct 2711313 ACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACCATCGACAATGTCAAGTCG 2711372 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || || || ||||| || || || || || |||||||| Sbjct 2711373 AAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATTTTCGCCGGCAAG 2711432 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||||||| | ||||||||||| || || || || ||||| Sbjct 2711433 CAGCTTGAGGATGGCCGCACCCTTTCCGATTACAATATCCAGAAGGAGTCCAC 2711485 >seq12 Length=8749402 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || || |||| ||||| ||||| | Sbjct 4927205 AAGATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACCCTTGAGGTGGAGTCT 4927264 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| || || ||||| Sbjct 4927265 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 4927324 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||| ||||| ||| | |||||| ||||||| | ||| ||| Sbjct 4927325 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 4927384 Query 22396 AACATTCAAAAAGA 22409 ||||| || || || Sbjct 4927385 AACATCCAGAAGGA 4927398 >seq17 Length=2611553 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| || || || || || | || ||| | Sbjct 1259302 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 1259243 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| ||||| || ||||| || || || Sbjct 1259242 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACT 1259183 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | |||||| ||| || ||||||| |||||||| || || Sbjct 1259182 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 1259123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727913037605