Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq12 125 8e-24 seq13 105 7e-18 seq17 93.3 5e-14 >seq12 Length=8749402 Score = 125 bits (138), Expect = 8e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| || ||| || || | || || |||||||| ||| Sbjct 4927404 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 4927345 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 || || ||||||||||||||||||| || | || |||||||||| ||| || ||| Sbjct 4927344 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 4927285 Query 42132 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 | ||| | | | |||||| || ||||| || | |||||||| || ||||| || || Sbjct 4927284 A-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGT 4927226 Query 42191 CTTTACAAAGATTTGCATTTT 42211 ||| || ||||| ||||| || Sbjct 4927225 CTTGACGAAGATCTGCATCTT 4927205 >seq13 Length=4347623 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| |||| || || || | || || |||||||||||||| || Sbjct 2712213 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 2712154 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || |||||||||||||||| || | | |||||||||| ||| | || | || | | Sbjct 2712153 ATAAGTCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC-TGAATCTTGGACTTCACATT 2712095 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || ||||| || || || || | ||||| || || || || || ||||| || Sbjct 2712094 ATCAATAGTATCGCTGGACTCGACCTCCAGAGTGATTGTCTTTCCAGTGAGAGTCTTGAC 2712035 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 2712034 AAAGATCTGCAT 2712023 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||||| || |||| || || ||||| |||||||| Sbjct 2711986 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCGAA 2711927 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||| ||||| | || | | ||||| ||| ||| | || | | ||| Sbjct 2711926 GATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCC-TGAATCTTCGACTTCACGT 2711868 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | ||||||| |||||||| || | |||||||| || || || || ||||| | Sbjct 2711867 TATCGATCGTGTCGGATGATTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGA 2711808 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 2711807 CGAAGATTTGCAT 2711795 >seq17 Length=2611553 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | ||||| || | || || |||||||| |||||||| | Sbjct 1259121 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 1259180 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | ||||||||||| || | || | || |||||||||| ||| || |||| | Sbjct 1259181 TCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1259240 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | ||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 1259241 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1259300 Query 42199 A 42199 | Sbjct 1259301 A 1259301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212684567280