Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11 141 9e-29 seq10 116 4e-21 seq13 107 2e-18 seq12 95.1 1e-14 >seq11 Length=4934405 Score = 141 bits (156), Expect = 9e-29 Identities = 507/785 (65%), Gaps = 31/785 (4%) Strand=Plus/Plus Query 153383 CTCGTACGGCATGCGCAGCAGCACA-AAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 |||| | ||||||||||| |||| || || ||||| |||||||||| |||||| || | Sbjct 3280161 CTCGAAAGGCATGCGCAG-AGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACACCAA 3280219 Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 |||| || || | ||||||| | || | | ||| ||||| || ||||| Sbjct 3280220 TGGGCCGGTGTCGCATGTTGCTGTTGCGAGCTTCAGGAACGGGGTAGTGGTTCACATCGA 3280279 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | || |||| |||||||| || || | || | | | | || |||| ||| |||| Sbjct 3280280 TGATCCTGTTCAGGTTGCGAACGACAGTCTGTGTGACCTCGTGTAGCTTCTGGAAGTCAT 3280339 Query 153562 AGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGG 153621 || |||||| | | | | | ||| | || || || || ||||| | Sbjct 3280340 AGCAGGCCTCGTCGTAGTTGATGAAAGAGGGAAGGGCGAGGGAGGCAAGGTTGCAGACAG 3280399 Query 153622 CCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 | ||| || | | | | ||||| | ||||||| ||| |||||| || ||| Sbjct 3280400 CAACCTCATCAGGGGCACAGTACTCGATAATCTCGGTGCAAAGGTTGGAGCTGCGAATGG 3280459 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 || | || | ||| ||||| ||||| ||||| || ||| |||||||| | || Sbjct 3280460 TACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGT 3280519 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798 ||| ||||| || | |||| ||| | ||| || | ||| || || Sbjct 3280520 TGCCAGTCTCAGTCTGAGCCTCGAGGATGGCATACCAGAGC---TTCTGGGCCTTCATGG 3280576 Query 153799 GCTGCCGA----TAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCG 153854 || ||| || | ||| || || || ||||||||| ||| ||||| || Sbjct 3280577 TCTTGCGACCCTTACCAGCCTTC----TCATACTTCTCGTACAGAGCCTCGAACTCCTCA 3280632 Query 153855 CCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCG 153914 |||||||||||||||||||||||||||| | |||||||| || | ||| | ||| Sbjct 3280633 CCGTAGCAGTCGGCGAGGCCGGGACACTCGTTGGGACACATGAGAGTCCAGTCACCGTTC 3280692 Query 153915 GCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCC 153974 | ||| || |||||| ||||| || | |||||| || | |||||||| || Sbjct 3280693 TTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGAGC- 3280751 Query 153975 TTGCAA---TCCTCCGCGCC---CATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCG 154028 || | |||||| ||| | ||||| ||| | || | | ||| || Sbjct 3280752 --GCGAACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAACTCAAAGACATCT 3280806 Query 154029 GCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCG 154085 ||||||||||| |||| ||||| ||| | |||||| ||| || || ||||||||| Sbjct 3280807 GCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTATTGCCACCCTGATCG 3280866 Query 154086 ACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCG 154145 |||| || | | ||||||||||| || | |||||| | ||| | | ||| ||| Sbjct 3280867 ACGTATCGGGCAGTGTTGTTGAAGACACGGAGCATGGGGGTAACACCGTTGGAGGTACCG 3280926 Query 154146 TTGGT 154150 ||||| Sbjct 3280927 TTGGT 3280931 >seq10 Length=5928648 Score = 116 bits (128), Expect = 4e-21 Identities = 470/728 (65%), Gaps = 27/728 (4%) Strand=Plus/Minus Query 52122 GCGTTCTTCGCCGCCGCCGATAGCATCGTGAACATTAACCTCATCGAGTACATGCAGCGG 52181 || ||||| |||||| | || ||||||| ||| ||||| | ||| || |||||| Sbjct 4471085 GCCTTCTTTGCCGCCTCTGACGGCATCGTCAACGAGAACCTTGTTGAGCG-ATTCAGCGG 4471027 Query 52182 AACGTTCCGGAACTC-GAGGCGCAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGT 52240 | ||| || | | ||||| | || ||| || ||| || | | || ||| | | Sbjct 4471026 CGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATGGAGAACAT 4470967 Query 52241 GCACACGGAGATGTACAATCTGCTCATTGAGCAGCTGATAAAAGATGAGCA---CGAGCG 52297 ||| | |||| ||| ||||||||||| || || ||| | | |||| | |||| Sbjct 4470966 CCACTCCGAGACCTACTCCCTGCTCATTGA-CACCT-ATATCA-AGGAGCCTTCCCAGCG 4470910 Query 52298 CGACACGCTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGC 52357 | || | || || | ||| | | || ||| | ||||| ||||| | ||||| Sbjct 4470909 AACCTACCTCTTCAACGCCATTGAGACCATCCCTTGCATCCGCAAGAAGGCCGACTGGGC 4470850 Query 52358 AATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCAT 52417 || |||||| || | | | | | | ||| |||| | || |||||||| Sbjct 4470849 CATCCGATGGATCCAGGACAAGGACTCTTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGC 4470790 Query 52418 AGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGG 52477 |||||||| | ||||| ||| |||||| ||||||| | | || | | || Sbjct 4470789 CGTCGAGGGTATCTTTTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGG 4470730 Query 52478 CATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACAC 52537 | |||||||| ||||| ||| |||||||| ||||| || || || || || ||||| Sbjct 4470729 TCTCATGCCCGGTCTGACCTTCTCTAACGAGTTAATATCTCGTGATGAGGGTCTTCACAC 4470670 Query 52538 GGACTTTGCGTGCCTCT---ACTACAAG----ACGCGCGTGACCGAAAAATTGGATTCGG 52590 |||||||| |||||| ||| | | | | |||| | || | | || Sbjct 4470669 CGACTTTGCCTGCCTCCTCCACTCCCACCTCAAGGGCCGTGCTAGCAA----GCA---GG 4470617 Query 52591 ACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCG 52650 || ||| | ||| ||| || || || | || || ||||||| | || | | Sbjct 4470616 TCA---TCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTGACTGAGG 4470560 Query 52651 CGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTG 52710 | || || || || || ||||||||||| | |||| ||||||||||||| | Sbjct 4470559 CTCTCCCCTGCGCCCTTCTCGGCATGAACGCCGATCTCATGAAGCAGTACATCGAGTTCG 4470500 Query 52711 TGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCG 52769 | || || ||||| |||| ||||| || | | ||| || ||| | ||| || Sbjct 4470499 TCGCTGACCGTCTTCTGGTCGCCCTCGG-CAACGAGAAGGTCTACAAGTCCGCCAACCCC 4470441 Query 52770 TTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 || || || ||| | ||||| || || | |||||||||||||| ||||||||||| ||| Sbjct 4470440 TTCGACTTCATGGAGAACATCTCTCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTC 4470381 Query 52830 GGCGAGTA 52837 || || || Sbjct 4470380 GGTGACTA 4470373 >seq13 Length=4347623 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | || | | |||||||| || |||||||||||||| Sbjct 2712021 CCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTG 2711962 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||||||| || || | |||| || ||||||||||| ||||| Sbjct 2711961 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 2711902 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || | || | | || | ||||||| || ||||| Sbjct 2711901 ATTCCTTCCTTATC-CTGAATCTTCGACTTCACGTTATCGATCGTGTCGGATGATTCCAC 2711843 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| ||||| || || || || ||||| Sbjct 2711842 CTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2711795 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | || || ||||| || || || || | | Sbjct 2711760 GACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCA 2711701 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || || ||||| || || || ||||| ||| ||| || | Sbjct 2711700 AAGATCAGGCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACG 2711641 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||||||| || | || || |||||||| || || Sbjct 2711640 TTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTG 2711581 Query 138601 AC 138602 || Sbjct 2711580 AC 2711579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | || ||||| |||||||||||||| Sbjct 2712249 CCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAG 2712190 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | | |||| || ||||| ||||| || || Sbjct 2712189 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGG 2712130 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| | || | || | | || | || ||| | ||||| || Sbjct 2712129 ATACCCTCCTTGTC-CTGAATCTTGGACTTCACATTATCAATAGTATCGCTGGACTCGAC 2712071 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| ||||| || ||||| |||||||| Sbjct 2712070 CTCCAGAGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 2712023 >seq12 Length=8749402 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||||| || || || | | | Sbjct 4927399 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 4927340 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 4927339 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 4927280 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||| | || | || || || || || || || || Sbjct 4927279 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTCTTGAC 4927220 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 4927219 GAAGATCTGCAT 4927208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262294544240