Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq11 188 9e-43 seq10 136 5e-27 >seq11 Length=4934405 Score = 188 bits (208), Expect = 9e-43 Identities = 665/1022 (65%), Gaps = 30/1022 (3%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || |||||| || | | ||||||| |||| || || ||||| |||||||| Sbjct 3279820 AACTCGCCAGCGAGGACACGACGCTGATAGATATTGGAGGTATAAGGCTCGAAGCACTCG 3279879 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 |||||||||| ||| || | ||| || ||||||||||| || | || || |||||| Sbjct 3279880 TTGTTACCCAGGATCTGCGAAGTGCTAGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTG 3279939 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 ||| ||| | || | | | ||| |||| | |||||||| || | | | Sbjct 3279940 CGGGTACCATGCTCCTTGACCTGCTCCCTGAGAGACTCCCAGTCCCAGAGGTCAGAGGGC 3279999 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | | | | |||||| || |||||||| ||||| | || || || || |||| || || Sbjct 3280000 TTCACTTTCCACATGTCGAACTGGAGAATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTG 3280059 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || || ||||| ||| || | | |||| || |||||| || || || Sbjct 3280060 GAGTAGGGACCCTCCTCCTTGGCGAGCTGCACGGA---AGCAGTGAGGGCAGCATGGTAG 3280116 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGC-CTTG-GCCTCGTCGGAATCAAACGCGAGAC 116230 || |||||||| || | |||| || || | ||||| || || || | | | Sbjct 3280117 ATGGTCTCAAAGATCTGCTTGTTCA--GCTCTCGAGCCTCAGGAGACTCGAAAGGCATGC 3280174 Query 116231 GGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 116289 ||| | || || |||| || ||||| |||||||||| ||||| || || |||| | Sbjct 3280175 -GCAGAGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACACCAATGGGCCGGTGTCGC 3280233 Query 116290 ATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 116349 || || || ||||| ||||| || ||| |||||| | ||| || || Sbjct 3280234 ATGTTGCTGTTGCGAGCTTCAGGAACGGGGTAGTGGTTCACATCGATGATCCTGTTCAGG 3280293 Query 116350 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC-TC 116408 || |||| || ||||| || || ||||| | | | ||| | | | | || || Sbjct 3280294 TTGCGAACGACAGTCTGTGTGACCTCGTGTAGCTTCTGGAAGTCATAGCAG-GCCTCGTC 3280352 Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 | |||| | |||||||||| || || || || || |||| |||||| Sbjct 3280353 GTAGTTGATGAAAGAGGGAAGGGCGAGGGAGGCAAGGTTGCAGACAGCAACCTCATCAGG 3280412 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528 || |||||| ||||| || || || | || || || |||||| || | |||||| Sbjct 3280413 GGCACAGTACTCGATAATCTCGGTGCAAAGGTTGGAGCTGCGAATGGTACCAAGGTTCTT 3280472 Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588 || || ||| ||| || ||||||||||||||| | || | || ||||| || Sbjct 3280473 CTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCAGT 3280532 Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647 || | || ||| || || | ||| | | || | ||| || ||| ||| || | Sbjct 3280533 CTGAGCCTCGAGGATGGCATACCAGAGCTTCTG-GGCCTTCA---TGGTCTTG---CGAC 3280585 Query 116648 CCT------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCT 116700 ||| ||| ||| ||||| ||| || ||||| ||||| ||| || ||| || Sbjct 3280586 CCTTACCAGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCA-CCGTAGCAGTCG 3280644 Query 116701 GAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGC 116760 | ||| || || || | ||||| | ||||| ||| | ||| || ||| || ||| Sbjct 3280645 GCGAGGCCGGGACACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACACGC 3280704 Query 116761 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCA 116820 ||||||||||| || || |||||||| ||| ||| || || ||| |||| | || || Sbjct 3280705 TTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGAGCGCGAACCTCCTCC 3280764 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || |||| || | || || | || ||| |||||||| || || ||| Sbjct 3280765 TTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGG 3280824 Query 116881 TA 116882 || Sbjct 3280825 TA 3280826 >seq10 Length=5928648 Score = 136 bits (150), Expect = 5e-27 Identities = 529/819 (65%), Gaps = 27/819 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| ||| | || ||| |||||||| Sbjct 4470372 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGAGAGATGTTCTCCAT 4470431 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGC-ACCCCAATCTGTTTGAG 127344 || || || ||||| || || | | | |||| | | | | | || Sbjct 4470432 GAAGTCGAAGGGGTTGGCGGACTTGTAGACCTTCTCGTTGCCGAGGGCGACC------AG 4470485 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| || | |||| |||| ||||||| ||| || | |||||| |||| || Sbjct 4470486 AAGACGGTCAGCGACGAACTCGATGTACTGCTTCATGAGATCGGCGTTCATGCCGAGAAG 4470545 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||| || || | |||| ||| ||||||| || || || | ||| Sbjct 4470546 GGCGCAGGGGAGAGCCTCAGTCAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGAT 4470605 Query 127465 GGCGTGAATAGTGTCCACCCCAG---GTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGC 127521 | | || || | | | || | | ||| | | | || ||| || || Sbjct 4470606 GTCCTGGATGACCTGCTTGCTAGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CAG-GC 4470662 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 ||| || ||| |||||||| ||||| || || | || || |||||| |||||| || Sbjct 4470663 AAAGTCGGTGTGAAGACCCTCATCACGAGATATTAACTCGTTAGAGAAGGTCAGACCGGG 4470722 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||||||||| |||||||| | |||||| || | | ||| | || ||| ||||| || Sbjct 4470723 CATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAAAAGATACC 4470782 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACC 127700 ||| || ||||| |||| ||||||| ||||||||| | | | |||| | | || Sbjct 4470783 CTCGACGGCAGCGAAGGCAACGAGACGCTGGGCAAAGGA-AGAGTCCTTGTCCTGGATCC 4470841 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760 | || ||||| | ||||| || ||| || |||| ||||| || || | |||| Sbjct 4470842 ATCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGAAGA 4470901 Query 127761 GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGC 127820 | | | | || || || ||||| || | || ||||| || || || ||| Sbjct 4470902 GGTAGGTTCGCTGGGAAGGCTCCTTGATATAGGTGTCAATGAGCAGGGAGTAGGTCTCGG 4470961 Query 127821 CGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 127879 ||||| | | ||| || | ||| | ||||||| | || || ||| ||||| Sbjct 4470962 AGTGGATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGG 4471020 Query 127880 ACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 127938 ||||| | || ||| | | | | ||||| || || || || || | ||||| Sbjct 4471021 ACCTC-GCCGCTGAATCGCTCAACAAGGTTCTCGTTGACGATGCCGTCAGAGGCGGCAAA 4471079 Query 127939 AAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTC 127995 || || || || | ||||| ||| || | | ||| || | |||||||| Sbjct 4471080 GAAGGCAAGAATGTGAGAGATGAAGAACTGCTCGTCGGAGGTCAGGCGGTTGTTCCAGTC 4471139 Query 127996 GTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 || ||||||||| || ||||| | ||||||||||||||| Sbjct 4471140 GTGGAGATCCTTGGACAGATCAATCTCCTCCGCAGTCCA 4471178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507069629720