Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10 226 3e-54 seq12 125 7e-24 seq13 116 4e-21 seq17 111 2e-19 >seq10 Length=5928648 Score = 226 bits (250), Expect = 3e-54 Identities = 559/837 (67%), Gaps = 41/837 (5%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || ||| || ||| | ||| || || ||||||||| Sbjct 4470388 TTCTCGAAGAAGTTGGTCTTGCCACCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTG 4470447 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 || | |||||| ||| | |||||| || |||| || || | ||| || |||||| Sbjct 4470448 GCGGACTTGTAGACCTTCTCGTTGCCGA---GGGCGACCAGAAGACGGTCAGCGACGAAC 4470504 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 |||||||| ||| |||| ||| || | || || || |||| || || || || Sbjct 4470505 TCGATGTACTGCTTCATGAGATCGGCGTTCATGCCGAGAAGGGCGCAGGGG-AGAGCCTC 4470563 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 || || || ||||| |||| ||| || || |||| ||| ||| | | | | Sbjct 4470564 AGTCAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTGGATGACCTGCTT 4470623 Query 132861 GCT----CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916 ||| ||||| ||| | || | | | ||| ||||||||| || | | Sbjct 4470624 GCTAGCACGGCCCTTG----AGGTGGGAGTGGAGGAGGCAGGCAAAGTCGGTGTGAAGAC 4470679 Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || | || || | ||||| ||| |||| ||||||||||| || || || | Sbjct 4470680 CCTCATCACGAGATATTAACTCGTTAGAGAAGGTCAGACCGGGCATGAGACCACGCTTCT 4470739 Query 132977 TGAGCCAAAATATGGCGGCGAA---ACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033 ||||||| || |||| || || || | | |||| |||| ||||||||||| |||| Sbjct 4470740 TGAGCCAGAAGATGGAAGCAAAGGCACCG-CTGAAA--AAGATACCCTCGACGGCAGCGA 4470796 Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCCA 133091 | || || || |||| | | || | | || ||| ||| |||||| || | ||||| Sbjct 4470797 AGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGTCCTG--GATCCATCGGATGGCCCA 4470854 Query 133092 TTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTC 133151 |||||||| | || ||| || || || || |||||||| | | | | || ||| | Sbjct 4470855 GTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGA--AGAGGTAGGTTCGC 4470912 Query 133152 TTCCGAGGAACGC------ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTAC 133205 | |||| || | |||||||| ||||| || || | || ||||| | Sbjct 4470913 T----GGGAAGGCTCCTTGATATAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGAT 4470968 Query 133206 GTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTG 133265 ||||||||| ||| || || ||||| ||||| || |||||| | ||| || || Sbjct 4470969 GTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCC 4471028 Query 133266 AGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAG 133325 ||| ||||| || || || ||||||||||||||||| |||||| || ||||| || Sbjct 4471029 GCTGAATCGCTCAACAAGGTTCTCGTTGACGATGCCGTCAGAGGCGGCAAAGAAGGCAAG 4471088 Query 133326 CACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTC 133382 | ||| |||||| |||||| | | ||| ||| | ||||||| | || Sbjct 4471089 AATGTGAGAGATGAAGAACTGCTCGTCGGAGGTCAGGCGGTTGTTCCAGTCGTGGAGATC 4471148 Query 133383 CTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||||| || | |||||| | ||||| || || |||||||| || |||||||| Sbjct 4471149 CTTGGACAGATCAATCTCCTCCGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 4471205 >seq12 Length=8749402 Score = 125 bits (138), Expect = 7e-24 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || ||||||||| | || || ||| | Sbjct 4927205 AAGATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACCCTTGAGGTGGAGTCT 4927264 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| |||| Sbjct 4927265 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 4927323 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||| ||||| || || | |||||||| | |||||| Sbjct 4927324 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 4927383 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || || || |||| || || Sbjct 4927384 CAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTCCTCCG 4927422 >seq13 Length=4347623 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||||| | || || || | || Sbjct 2711795 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAATCATCC 2711854 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | || || || |||||||| | ||||| Sbjct 2711855 GACACGATCGATAACG-TGAAGTCGAAGATTCAGGATAAGGAAGGAATTCCTCCTGACCA 2711913 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| ||||| || || || |||| || || |||| ||||||||| Sbjct 2711914 ACAGCGACTTATCTTCGCTGGCAAGCAACTCGAGGACGGCCGAACTCTCAGCGACTACAA 2711973 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || ||| || | || || Sbjct 2711974 CATCCAGAAGGAGTCTACTCTGCACCTGGTTCTTCGTCTGCGTGGTGG 2712021 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || || ||||| | || |||||| ||| | Sbjct 2712023 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACTCTGGAGGTCGAGTCCAGC 2712082 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || || || | ||||| ||||| || ||| ||||||| Sbjct 2712083 GATACTATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAG 2712142 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| || | ||||||||| ||||||||| Sbjct 2712143 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTCTCTGACTACAAC 2712202 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| |||| ||||| | ||||| ||| | | ||||| Sbjct 2712203 ATTCAGAAGGAATCGACCCTGCACCTTGTGCTCCGTCTCCGTGGCGG 2712249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || || || ||||| || |||||| |||| || ||| | |||||| | Sbjct 2711577 TCGTCAAGACCCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCG 2711636 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || ||| |||| ||||| ||||| ||||| | || || ||||| || Sbjct 2711637 ACAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAGCAGCGCCTG 2711695 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | ||||||||| |||||||||||| || ||| Sbjct 2711696 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATTCAGAAG 2711755 Query 38433 GA 38434 || Sbjct 2711756 GA 2711757 >seq17 Length=2611553 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 1259301 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 1259242 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | || || ||||| || Sbjct 1259241 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACTG 1259182 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 1259181 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 1259122 Query 38433 G 38433 | Sbjct 1259121 G 1259121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172693713280