Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11 244 1e-59 seq10 109 7e-19 seq16 91.5 2e-13 seq1 86.0 8e-12 >seq11 Length=4934405 Score = 244 bits (270), Expect = 1e-59 Identities = 960/1493 (64%), Gaps = 45/1493 (3%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCA-AAGACTGGATGGTGTCTTGAT 111604 || ||||| |||||||||| ||| | ||||||| |||| || |||| | | Sbjct 3281291 TACTTTGGCTTCAAGACCCTTGAGCGATCTTACCTCCTCAAGATTG-ATGGCAAGATTGT 3281233 Query 111605 GGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGA 111664 || ||| ||| ||||| ||||||| || || |||| ||| || || | ||||| Sbjct 3281232 TGAGCGCCCCCAGCACATGATCATGCGTGTGGCTGTCGGCATCTGGGGTGACAACATTGA 3281173 Query 111665 TTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAAC 111724 ||| | ||||| ||| || ||||| | | |||| ||||| | || || Sbjct 3281172 GCGTGTCCTCGAGACTTACAACCTCATGTCGAGCAAGTTCTTCACTCACGCCTCCCCCAC 3281113 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 ||||||||| || ||||| || ||||| | ||| || |||||| | | | || Sbjct 3281112 CCTCTTCAATGCGGGTACCCCCCAGCCCCAGCTCTCCTCATGCTTCCTTGTCGACATGAA 3281053 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 |||||| || | || ||||| | ||||||| |||||| || || ||| Sbjct 3281052 GGAGGACAGTATTGAGGGTATTTATGATACTCTCAAGACTTGTGCCATGATTTCCAAGAT 3280993 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGG 111904 |||||||||||| || || || | || || | |||| ||| || || Sbjct 3280992 GGCTGGTGGTATTGGCCTGAACGTGCACCGAATCCGTGCCACTGGTTCTTACATCGCCGG 3280933 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 ||| || ||| || | ||| ||| || ||||| || || || ||| ||| || || Sbjct 3280932 TACCAACGGTACCTCCAACGGTGTTACCCCCATGCTCCGTGTCTTCAACAACACTGCCCG 3280873 Query 111965 CTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCC 112018 || || | || | ||| | ||| || || | || |||| |||||||| Sbjct 3280872 ATACGTCGATCAGGGTGGCAAT---AAGCGACCTGGTGCCTTTGCCATCTACCTTGAGCC 3280816 Query 112019 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG- 112077 |||||||| ||| || | ||||||||||| |||| ||||| || | ||||||| Sbjct 3280815 CTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGT 3280756 Query 112078 -CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136 |||| | ||||| || ||| |||||||||||||| ||||||||||||||| | || Sbjct 3280755 TCGCGCT--CGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTC 3280698 Query 112137 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC 112196 ||| ||| || | ||| ||||| | ||||| || || ||||| ||| |||| | Sbjct 3280697 GAGAAGAACGGTGACTGGACTCTCATGTGTCCCAACGAGTGTCCCGGCCTCGCCGACTGC 3280638 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG------AAAGTCGGGCG 112250 ||||||||||| || || || ||| ||||| ||| | | | |||| | Sbjct 3280637 TACGGTGAGGAGTTCGAGGCTCTGTACGAGAAGTATGAGAAGGCTGGTAAGGGTCGCAAG 3280578 Query 112251 ACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 112310 || || || |||| || | ||| | || || ||| || |||| || |||||| Sbjct 3280577 ACCATGAAGG-CCCAGAAGC-----TCTGGTATGCCATCCTCGAGGCTCAGACTGAGACT 3280524 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 112370 || | || | ||||| ||||| || ||| |||| ||||| || || ||||| | Sbjct 3280523 GGCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTT 3280464 Query 112371 GGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 112430 ||| || || |||||||| || || || || | || | | | |||||| Sbjct 3280463 GGTACCATTCGCAGCTCCAACCTTTGCACCGAGATTATCGAGTACTGTGCCCCTGATGAG 3280404 Query 112431 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC--CAGAGACAA 112488 ||||| || ||||| || || |||| || ||| | | | ||| | ||| | Sbjct 3280403 GTTGCTGTCTGCAACCTTGCCTCCCTCGCCCTTCCC---TCT-TTCATCAACTACGACGA 3280348 Query 112489 AGAC--ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAA 112546 | | | ||| | | || || ||||| || || | |||||| ||||| || Sbjct 3280347 GGCCTGCTATGACTTCCAGAAGCTACACGAGGTCACACAGACTGTCGTTCGCAACCTGAA 3280288 Query 112547 CAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACA 112606 ||| | || ||| || ||||||||| ||||| || || ||| |||| Sbjct 3280287 CAGGATCATCGATGTGAACCACTACCCCGTTCCTGAAGCTCGCAACAGCAACATGCGACA 3280228 Query 112607 CCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACG 112665 ||| || |||||| |||||||||| ||||| || |||| ||| || || || || || | Sbjct 3280227 CCGGCCCATTGGTGTCGGTGTCCAGGGTCTTGCCGATGCTTTCCTTGCTCTG-CG-CATG 3280170 Query 112666 CATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCAC 112724 | ||| || || || || || | || || || |||||||| || || || Sbjct 3280169 CCTTTCGAGTCTCCTGAGGCTCGAGAGCTGAACAAGCAGATCTTTGAGACCATCTACCAT 3280110 Query 112725 GCCGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 112781 || || || || ||| | || | || ||| || ||||| || ||||| Sbjct 3280109 GCTGCCCTCACTGC---TTCCGTGCAGCTCGCCAAGGAGGAGGGTCCCTACTCCACCTTC 3280053 Query 112782 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 112841 |||| ||||| || || | || | || || || || |||||| ||| || || Sbjct 3280052 AAGGGCTCTCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAAAGTGAAGCCCTCT 3279993 Query 112842 CTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 112901 | || |||||||| |||||| ||| | |||||||| | ||| || |||||| Sbjct 3279992 GACCTCTGGGACTGGGAGTCTCTCAGGGAGCAGGTCAAGGAGCATGGTACCCGCAACAGT 3279933 Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961 || || | || || ||||| || || ||| | || ||| ||||||| || || ||| Sbjct 3279932 CTGCTGCTTGCCCCCATGCCCACTGCTAGCACTTCGCAGATCCTGGGTAACAACGAGTGC 3279873 Query 112962 TTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 113014 || || || || || | || ||||||| | | | |||||| || ||||| Sbjct 3279872 TTCGAGCCTTATACCTCCAATATCTATCAGCGTCGTGTCCTCGCTGGCGAGTT 3279820 >seq10 Length=5928648 Score = 109 bits (120), Expect = 7e-19 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCA 102106 ||||| |||| ||||| ||||| | | || ||| | | ||||| | ||||| | Sbjct 4470944 CTCATTGACACCTATATCAAGGAGCCTTCCCAGC-GAACCTACCTCTTCAACGCCATTGA 4470886 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 102165 || | || || || | ||||| || || ||||| || ||| | | |||| | Sbjct 4470885 GACCATCCCTTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGGA 4470826 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | | ||||||||| |||| ||| | || || || || ||||||||||| ||| | Sbjct 4470825 CTC-TTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTTTTCAGCG 4470767 Query 102226 GTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || |||| ||| | || | |||||||||||||| ||||||||||| ||||| |||| Sbjct 4470766 GTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTC 4470708 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || |||||| | || |||||||| ||||| || ||| || ||||| Sbjct 4470707 TCTAACGAGTTAATATCTCGTGATGAGGGTCTTCACACCGACTTTGC 4470661 >seq16 Length=3011660 Score = 91.5 bits (100), Expect = 2e-13 Identities = 190/275 (69%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||| ||||||||||| |||| |||||| || || | || | || | || || Sbjct 1569116 GGCATCGATCTCATCAATAAAGATGATGCAAGGAGCGTTCTTACGGCCTTCTGCGAACAG 1569057 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 16182 || || ||||| | || ||||| ||||||||||| || || | | || || Sbjct 1569056 GTCTCGCACACGAGAAGGACCAACACCCACAAACATCTCGACGAACTCAGAACCGCTCAC 1568997 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | || | ||||||||| ||| || || || |||| |||||| || |||||||||| Sbjct 1568996 ACTGAA-GAAGGGGACTCCAGACTCGCCAGCCGTGGCCTTGGCGAGCAGTGTCTTACCCG 1568938 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 16299 |||| || ||| || || | || ||||| || |||||||| || |||| | || | Sbjct 1568937 TACCAGGGGGACCAGCTAGAATTGCTCCTCGGGGGATCTTGGCACCGAGCTTCTCGAACT 1568878 Query 16300 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATCTC 16333 |||| || ||||| ||||| | ||||| ||| Sbjct 1568877 ---TCTCGGGCTGCTTCAAGAAGCT-CACAAACTC 1568847 >seq1 Length=6466812 Score = 86.0 bits (94), Expect = 8e-12 Identities = 221/332 (67%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGA 16113 ||| | ||| |||| ||||||||||||||| ||| || ||| || || |||| Sbjct 5389544 TCCAATGGCGTCAAGCTCATCAATGAAGACAATGGCGGGAGACTTGGACTTGGC-AGCG- 5389601 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 ||||| || || || |||||||| || ||||| ||||| ||||| |||| | Sbjct 5389602 --GTGAAGAGCTCGCGAACTCGCTTGGCTCCGACACCCACAAAGATCTCATCAAA-CTCA 5389658 Query 16174 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | |||| | || |||||| ||| | |||||| |||| ||||| |||||||| Sbjct 5389659 CTACCAGACATGTAGAAGAAGGGAACACCGGCTTCACCAGCAACAGCTCGAGCGAGAAGC 5389718 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 16292 ||||| || ||||| || || | ||||| |||| || | |||||| ||| Sbjct 5389719 GTCTTTCCGGTACCGGGAGGGCCAACTAGGAGAACACCCTTGGGTAACTTGGCACCAAGG 5389778 Query 16293 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCG 16352 | | | |||| || | ||| ||||| || |||| ||| | | || || ||||| Sbjct 5389779 TCGCTGAACTTCTCGGGGTTCTTGAGAAACTCGACAACCTCCTGAAGCTCCTCCTTGGCC 5389838 Query 16353 GCGTCAATCCCCTCAACATCGGTAAACCGAGT 16384 | ||| || | |||||| | || || || Sbjct 5389839 TCATCACAGCCGTGGACATCGCTGAATCGGGT 5389870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742268092240