Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11 219 5e-52 seq16 138 1e-27 seq1 98.7 1e-15 >seq11 Length=4934405 Score = 219 bits (242), Expect = 5e-52 Identities = 1017/1594 (64%), Gaps = 55/1594 (3%) Strand=Plus/Plus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 ||||| |||||||| ||||| ||| || || |||||||| | || || ||| Sbjct 3279601 GACTGGGACTGATCAATGAAGGCACCTCGGTCGGCCGCCATCTGGACGACCTGGCGCTGG 3279660 Query 109567 CTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTT 109626 ||| ||||| || |||||||| | | ||||| ||| ||||||| | |||||| Sbjct 3279661 GAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGACCTCAGCGGGAATATTGGGGATGTTC 3279720 Query 109627 TGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCG 109683 || || || || |||| | | || | |||||| | ||||| || || Sbjct 3279721 TGGATGGAACCGTTCTCAGCAATGATTCTG---TTCTTCATGGAATCAGACCACAGGCCC 3279777 Query 109684 ACCTTTTTGAGATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739 | | |||||| | |||| || | || || || || || ||||| || Sbjct 3279778 ATATCGACGAGATCCTTGAGCAACCAGGGG----TTAACGACCTGGAACTCGCCAGCGAG 3279833 Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799 || || | ||||| || | || || || ||||| ||||| ||||| || ||||| Sbjct 3279834 GACACGACGCTGATAGATATTGGAGGTATAAGGCTCGAAGCACTCGTTGTTACCCAGGAT 3279893 Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859 || | |||| ||| ||||||||||| || | || |||||||| ||| ||| | | Sbjct 3279894 CTGCGAAGTGCTAGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGGGTACCATGCTC 3279953 Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC 109919 ||| ||| |||| | | | ||||| || | | || || ||| || Sbjct 3279954 CTTGACCTGCTCCCTGAGAGACTCCCAGTCCCAGAGGTCAGAGGGCTT-----CACTTTC 3280008 Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979 | |||| || || || | |||||||| || ||||| |||||||| | ||| | Sbjct 3280009 C-ACATGTCGAACTGGAGAATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGG 3280067 Query 109980 CCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAA 110039 ||||| ||| ||| | || ||||| || || ||||| || || |||||||| Sbjct 3280068 ACCCTCCTCCTTGGCGAGCTGCACGGAAGCAGTGAGGGCAGCATGGTAGATGGTCTCAAA 3280127 Query 110040 AATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAA 110098 || || |||| |||| ||| | | ||||| || | | || || || | Sbjct 3280128 GATCTGCTTGTTCAGCTCTCGAGCCTCAGGAGACTCGAAAGGCATGCG-CAGAGCAAGGA 3280186 Query 110099 ACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTC 110158 | |||| || |||||||| ||||||| ||||||||| || || |||||| | | Sbjct 3280187 AAGCATCGGCAAGACCCTGGACACCGACACCAATGGGCCGGTGTCGCATGTTGCTGTTGC 3280246 Query 110159 GAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCA 110215 |||| ||| |||||||| ||| ||||||| || || || || | Sbjct 3280247 GAGC---TTCAGGAACGGGGTAGTGGTTCACATCGATGATCCTGTTCAGGTTGCGAACGA 3280303 Query 110216 CAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAAC--GTTTTCGTC-TCCTTATTGA 110272 |||||| |||| || || || || | | | || | | ||||| | || ||| Sbjct 3280304 CAGTCTGTGTGACCTCGTGTAGCTTCTGGAAGTCATAGCAGGCCTCGTCGTAGTTGATGA 3280363 Query 110273 CATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGT 110332 | | ||| || || | || ||||| ||||| |||| | ||| || | | || Sbjct 3280364 AAGA---GGGAAGGGCGAGGGAGGCAAGGTTGCAGACAGCAACCTCATCAGGGGCACAGT 3280420 Query 110333 ATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCG 110392 | || | ||| || || || | |||||| || |||| ||| | ||||||||| || Sbjct 3280421 ACTCGATAATCTCGGTGCAAAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGC 3280480 Query 110393 ATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACT 110452 ||| |||||| |||||| ||||||||| | ||| | ||||| || ||||| | || Sbjct 3280481 TCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCAGTCTGAGCCT 3280540 Query 110453 TGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCT 110509 ||| ||||| | ||| | | || | ||| | || |||| | | ||| ||| Sbjct 3280541 CGAGGATGGCATACCAGAGCTTCTG-GGCCTTCATGGTCTTGCG--ACCCTTACCAGCCT 3280597 Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCG 110569 ||| ||||| ||||| |||| || |||| ||||| || | || || Sbjct 3280598 TCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCGGGAC 3280657 Query 110570 CCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629 || || |||||| | ||| | ||| | || || ||| || | ||||||||| || | Sbjct 3280658 ACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGAT 3280717 Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689 | |||||||| | ||| ||| ||||| || ||| |||| || | || ||||| Sbjct 3280718 CGGGAATCCAGAGAGCCAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTCT 3280777 Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749 ||| || || | || || | || ||| | |||||| || || || |||| || | || Sbjct 3280778 TGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGG 3280837 Query 110750 ATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCC 110803 || |||| | |||| || | || || || || ||| |||||||| | Sbjct 3280838 CACCAGGTCGCTTATTGCCACCC---TGATCGACGTATCGGGCAGTGTTGTTGAAGACAC 3280894 Query 110804 TGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGG 110863 |||||| || ||| || | ||| ||| || ||||| || || | ||| Sbjct 3280895 GGAGCATGGGGGTAACACCGTTGGAGGTACCGTTGGTACCGGCGATGTAAGAACCAGTGG 3280954 Query 110864 CACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-AC 110922 |||| || ||| | | || ||||||||||| ||| ||| ||| |||| | Sbjct 3280955 CACGGATTCGGTGCACGTTCAGGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAG 3281014 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAA 110982 ||| |||| ||| |||||||||| ||||| || |||| || | | || ||||| Sbjct 3281015 TCT-TGAGAGTATCATAAATACCCTCAATACTGTCCTCCTTCATGTCGACAAGGAAGCAT 3281073 Query 110983 GAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAAC 111042 || || | ||| || | || || |||||||||||||| || || | || ||| ||| Sbjct 3281074 GAGGAGAGCTGGGGCTGGGGGGTACCCGCATTGAAGAGGGTGGGGGAGGCGTGAGTGA-- 3281131 Query 111043 AGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074 ||| |||| ||||| |||||| || ||||| Sbjct 3281132 AGAACTTGCTCGACATGAGGTTGTAAGTCTCGAG 3281165 >seq16 Length=3011660 Score = 138 bits (152), Expect = 1e-27 Identities = 318/466 (68%), Gaps = 26/466 (6%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || || || || | | || | || || ||||| | ||||| ||| | Sbjct 1569301 CGATCGAATCGTCCAGGTCGCATCAAGGCCTTGTCGAGCATATCCGCTCGGTTAGTACCA 1569242 Query 11563 GCAATGACTACAATGCCAG-TCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 || | ||| |||| || | |||| ||| |||||||||||| || || || | ||||| Sbjct 1569241 GCCAGGACGACAA--CCTGCTCTCGGGTGTTGAAACCGTCCATCTCGGTAAGGATCTGGT 1569184 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677 | | ||| || |||||||||||| || | | | ||| || || || | Sbjct 1569183 TCAGAGTCGCCTCTCGCTCATCGTTGCCAC-CAAATCCTCGGCC--ACTCTCCTGTCGTG 1569127 Query 11678 --CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT 11731 |||| || || |||||||| || || | ||| || || ||| ||| | | Sbjct 1569126 CCCGACCAATGGCATCGATCTCATCAATAAAGATGATGCAAGGAGCGTTCTTACGGCCTT 1569067 Query 11732 GTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 | |||| || || || ||||| | |||||||| || |||||||| ||||| | | Sbjct 1569066 CTGCGAACAGGTCTCGCACACGAGAAGGACCAACACCCACAAACATCTCGACGAACTCAG 1569007 Query 11792 --CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | || | ||||||| |||||| || |||||| ||||| |||| ||||| || Sbjct 1569006 AACCGCTCA-CACTGAA-GAAGGGGACTCCAGACTCGCCAGCCGTGGCCTTGGCGAGCAG 1568949 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--A 11907 ||||||||||||||||| | |||||| |||| || || ||||||||||||||||| Sbjct 1568948 TGTCTTACCCGTACCAGGGGGACCAGCTAGAATTGCTCCTCGGGGGATCTTGGCACCGAG 1568889 Query 11908 CTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 |||| | || | ||| |||| ||| | |||| ||||| |||| Sbjct 1568888 CTTCTCGAACT---TCTCGGGCTGCTTCAAGAAGCTCACAAACTCC 1568846 >seq1 Length=6466812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || || ||||| ||||| ||||| || || |||||| | || | | Sbjct 5389604 GAAGAGCTCGCGAACTCGCTTGGCTCCGACACCCACAAAGATCTCATCAAACTCACTACC 5389663 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 ||| | | |||||||||| | |||||||| | ||||||||||| || ||||| Sbjct 5389664 AGACATGTAGAAGAAGGGAACACCGGCTTCACCAGCAACAGCTCGAGCGAGAAGCGTCTT 5389723 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 || ||||| || | ||| | || || | || ||| | |||||||||| | Sbjct 5389724 TCCGGTACCGGGAGGGCCAACTAGGAGAACACCCTTGGGTAACTTGGCACCAAGGTCGCT 5389783 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | ||| || |||||||| || || |||| ||||| ||| ||||||||||| Sbjct 5389784 GAACTTCTCGGGGTTCTTGAGAAACTCGACAACCTCCTGAAGCTCCTCCTTGGC 5389837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975874842600