Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq13 167 5e-36 seq12 129 1e-24 seq17 125 2e-23 >seq13 Length=4347623 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| ||||| ||||| || || || ||||| ||| ||||||| || || || Sbjct 2712004 AACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTC 2711945 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||||||||| |||||||| |||||||| ||||| || || || Sbjct 2711944 GAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCCTG 2711885 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| || || ||||| || |||||| |||||||| | ||||| Sbjct 2711884 AATCTTCGACTTCACGTTATCGATCGTGTCGGATGATTCCACCTCAAGGGTGATGGTCTT 2711825 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | ||| || ||||| | |||||| Sbjct 2711824 TCCAGTGAGAGTCTTGACGAAGATTTGCAT 2711795 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || |||||||| || ||||| ||||| ||||| || || | ||||| || Sbjct 2711776 AACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTC 2711717 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || || || || || ||||||||||| || ||||| || Sbjct 2711716 AAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTG 2711657 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| ||||||||| || || ||||| ||| ||||| || ||||| | ||||| Sbjct 2711656 GATCTTTGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTT 2711597 Query 195111 TCCTGTCAAAGTTTTTACGA 195130 || |||| || || |||| Sbjct 2711596 GCCAGTCAGGGTCTTGACGA 2711577 Score = 125 bits (138), Expect = 2e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||||||||| || || ||||||||||||| ||| || | ||||| || Sbjct 2711497 ACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGGCCATCCTCA 2711438 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || || || ||||| ||||| || ||||| ||| Sbjct 2711437 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGA 2711378 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || ||||| || || || || || ||||| | ||||| Sbjct 2711377 ATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTG 2711318 Query 195112 CCTGTCA 195118 || |||| Sbjct 2711317 CCCGTCA 2711311 Score = 109 bits (120), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || ||||| ||||| || | || || | ||||| || Sbjct 2712231 ACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCATCCTCC 2712172 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||||||||| || ||||| || || || || || ||||| ||| Sbjct 2712171 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGA 2712112 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || ||| || || ||||| || | | | || || || || || || | |||| Sbjct 2712111 ATCTTGGACTTCACATTATCAATAGTATCGCTGGAC--TCGACCTCCAGAGTGATTGTCT 2712054 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || | ||| || || || | ||||| Sbjct 2712053 TTCCAGTGAGAGTCTTGACAAAGATCTGCAT 2712023 >seq12 Length=8749402 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || || || ||||| ||| || || | ||||| ||| Sbjct 4927416 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 4927357 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 4927356 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 4927297 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| |||||||| | ||||| Sbjct 4927296 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTC 4927237 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 4927236 CCCGTAAGGGTCTTGACGAAGATCTGCAT 4927208 >seq17 Length=2611553 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||||||| ||||| || |||||||| || |||||||| Sbjct 1259123 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 1259182 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||| || || || || |||||||| || ||||| || || || |||||| || ||| Sbjct 1259183 AGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 1259242 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || |||| || || ||||| Sbjct 1259243 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1259301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481358341039