Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 120 2e-22 seq12 98.7 6e-16 >seq13 Length=4347623 Score = 120 bits (132), Expect = 2e-22 Identities = 146/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 2712214 TTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 2712155 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| |||||||| | || | ||||||||||| |||||| || || | Sbjct 2712154 GATAAGTCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTCAC--A 2712097 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | |||| || || | || ||| || || | || || || ||||| |||||||||| Sbjct 2712096 T--TATCAATAGTATCGCTGGACTCGACCTCCAGAGTGATTGTCTTTCCAGTGAGAGTCT 2712039 Query 34966 TCACAAAGATCTGCATA 34982 | ||||||||||||||| Sbjct 2712038 TGACAAAGATCTGCATA 2712022 Score = 82.4 bits (90), Expect = 5e-11 Identities = 122/171 (71%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || |||||| | || |||| || ||||| || ||||| || Sbjct 2711479 TCCTTCTGGATATTGTAATCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAA 2711420 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| ||||||| ||||| || Sbjct 2711419 ATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGAC--AT 2711362 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | ||||| ||| || |||||| |||| ||| ||||| || ||||| Sbjct 2711361 --TGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGT 2711313 >seq12 Length=8749402 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||| || ||||| ||||| ||||| ||| | || |||| || Sbjct 4927416 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 4927357 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || ||||| |||||||| | || | ||||||||||| Sbjct 4927356 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 4927297 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| ||||| || Sbjct 4927296 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTC 4927237 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || ||||| || ||||||||||| || Sbjct 4927236 CCCGTAAGGGTCTTGACGAAGATCTGCATCTT 4927205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633532739976