Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11 311 2e-79 seq10 212 1e-49 >seq11 Length=4934405 Score = 311 bits (344), Expect = 2e-79 Identities = 860/1287 (67%), Gaps = 65/1287 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || |||||||| ||||||||||||||||||||| |||||| || |||| | ||||| || Sbjct 3280099 GTGAGGGCAGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAG-CTCTCGAGCCTCAGG 3280157 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 ||| ||| ||||| ||||| | | ||||| | ||||| || ||||| || |||| | Sbjct 3280158 AGACTCGAAAGGCATGCGCAG-AGCAAGGAAAG-CATCGGCAAGACCCTGGACACCGACA 3280215 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||||| ||||| | ||||| | ||| ||||| || ||||| || ||| | Sbjct 3280216 CCAATGGGCCGGTGTCGCATGTTGCTGTTGCGA--GCTTCAGGAACGGGGTAGTGGTTCA 3280273 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGAT-GACTTTAACCACCTCGGTCAGCTTCTGG 221650 | ||||| | |||| ||||| || || | || | |||||| ||||||||| Sbjct 3280274 CATCGATGATCCTGTTCAGGTTGCGAACGACAGTCTGTGTG-ACCTCGTGTAGCTTCTGG 3280332 Query 221651 ---TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCA 221707 | || | | || || ||| || || | |||| | ||||| Sbjct 3280333 AAGTCATAGCAGGCCT------CGTCGTAGTTGATG---------AAAGAGGGAAGGGCG 3280377 Query 221708 ACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTA 221767 | | ||| ||||| || || || ||||| || | |||| || ||||| || Sbjct 3280378 AGGGAGGCAAGGTTGCAGACAGCAACCTCATCAGGGGCACAGTACTCGATAATCTCGGTG 3280437 Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827 || |||||| || ||||| || |||| || || || |||||| ||| ||| | Sbjct 3280438 CAAAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTG 3280496 Query 221828 -TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886 |||||||||||||| ||||| ||||||||| ||||||| | || || | ||| Sbjct 3280497 ATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCAGTCTGAGCCTCGAGGATGGCATACCA 3280556 Query 221887 GAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCT---CGGTCTTTTCATAC--CCG 221941 ||| | ||||| || | | ||||| ||||| | | ||| |||||| | Sbjct 3280557 GAGCT-TCTGGGCCTT--CATGGTCTTGCG---ACCCTTACCAGCCTTCTCATACTTCTC 3280610 Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 ||| ||||| | | |||| |||||||| ||| | ||||| |||||| | |||| Sbjct 3280611 GTACAGAGCCT--CGAACTCCTCACCGTAGCAGTCGGCGAGGCCGGGACACTCGTTGGGA 3280668 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 ||||| ||| |||||| ||| | | ||| | || ||||||||| || || ||||| Sbjct 3280669 CACATGAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAG 3280728 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 || ||| | || || || | | || ||||||| ||||| ||| || | ||| || Sbjct 3280729 AGAGCCAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCA 3280788 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 | |||||||| | || |||||||| ||||| || |||| ||| | || || |||||| Sbjct 3280789 AGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGC 3280848 Query 222182 TTGTTGCCACCCTGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAG--GGTCGG 222237 || |||||||||||||| || ||| ||| | |||||||| || || | || Sbjct 3280849 TTATTGCCACCCTGATCGACGTATC--GGGCAGTGTTGTTGAAGACACGGAGCATGGGGG 3280906 Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297 || || |||||||| ||||||||| || ||||| | ||| ||| | || | Sbjct 3280907 TAACA--CCGTTGGAGGTACCGTTGGTACCGGCGATGTAAGAACCAGTGGCAC---GGAT 3280961 Query 222298 ACTG-GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354 | | ||| || ||| |||||||| || || || |||||||| || ||||||| Sbjct 3280962 TCGGTGCACGTTCAGGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAG 3281021 Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACAT 222414 ||| || || ||||| ||| ||||||||| | || | || || || || || | Sbjct 3281022 AGTATCATAAATACCCTCAATACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGAGAG 3281081 Query 222415 CTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT 222474 ||| | | || || || || || || || ||||| |||||| || ||| | || Sbjct 3281082 CTGGGGCTGGGGGGTACCCGCATTGAAGAGGGTGGGGGAGGCGTGAGTGAAGAACTTGCT 3281141 Query 222475 AGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGG 222533 ||||| || | ||| ||||| | ||| | | |||||||| ||| || | | | Sbjct 3281142 CGACATGAGGTTGTAAGTCTCGAGGACACGCTCAATGTTGTCACCCCAGATGCCGACAGC 3281201 Query 222534 CGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC--TGGAGAGCAG 222591 | || | |||| ||||| |||||| | ||| ||| | | | | | | ||| || Sbjct 3281202 CACA-CGCATGATCATGTGCTGGGGGCGCTCAACA--ATCTTGCCATCAATCTTGAGGAG 3281258 Query 222592 GTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAAC 222651 ||| ||| || || |||||||| |||||||| | | | ||||| | | | | || Sbjct 3281259 GTAAGATCGCTCAAGGGTCTTGAAGCCAAAGTATTGGTATTGGAAGTCACGGTCATAGAC 3281318 Query 222652 CACGGCGGCGTCCAGCTCCGACTTGTG 222678 | ||||| ||| |||||| |||||| Sbjct 3281319 AATGGCGGAGTCTAGCTCCTCCTTGTG 3281345 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | ||| || | || || || | || Sbjct 3279807 GTTAACGACCTGGAACTCGCCAGCGAGGACACGACGCTGATAGATATTGGAGGTATAAGG 3279866 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||| ||||||||||| | ||||| || ||||||||||| || | Sbjct 3279867 CTCGAAGCACTCGTTGTTACCCAGGATCTGCGAAGTGCTAGCAGTGGGCATGGGGGCAAG 3279926 Query 221236 CAGCAGACTGTTGCG 221250 ||||||||||||||| Sbjct 3279927 CAGCAGACTGTTGCG 3279941 >seq10 Length=5928648 Score = 212 bits (234), Expect = 1e-49 Identities = 558/853 (65%), Gaps = 16/853 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| |||||| || || |||||||||||| Sbjct 4471214 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAGGAGATTGATCTG 4471155 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| | ||| |||| || || || || ||||||||| || || Sbjct 4471154 TCCAAGGATCTCCACGACTGGAACAACCGC-CTGACCTCCGACGAGCAGTTCTTCATCTC 4471096 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || |||||||| |||||||| || || || |||||||| || ||| | Sbjct 4471095 TCACATTCTTGCCTTCTTTGCCGCCTCTGACGGCATCGTCAACGAGAACCTTGTTGAGCG 4471036 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||||| | | || || ||| | ||||| || ||||||||||||||||| || Sbjct 4471035 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 4470976 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || || ||| | || || || | || | Sbjct 4470975 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTATATCAAGGAGCCTTC 4470916 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | || || || || ||||| ||| ||| || ||||| | |||||| Sbjct 4470915 CCAGCGAACCTACCTCTTCAACGCCATTGAGACCATCCCTTGCATCCGCAAGAAGGCCGA 4470856 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||||| |||||| | | || | || | |||| | |||| || || ||||| Sbjct 4470855 CTGGGCCATCCGATGGATCCAGGACAAGGACTCTTCCTTTGCCCAGCGTCTCGTTGCCTT 4470796 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||||| || ||||| ||||||||||||||| | ||||| ||||||||||||||||| | Sbjct 4470795 CGCTGCCGTCGAGGGTATCTTTTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAAGAA 4470736 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||||||| ||| ||| || |||||| | || | || |||||||| Sbjct 4470735 GCGTGGTCTCATGCCCGGTCTGACCTTCTCTAACGAGTTAATATCTCGTGATGAGGGTCT 4470676 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT--CAA 26070 |||| || ||||||||||| ||| || | |||| ||| | | | || ||| Sbjct 4470675 TCACACCGACTTTGCCTGCCTCCTCCACTC---CCAC---CTCAAGGGCCGTGCTAGCAA 4470622 Query 26071 G-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 | || | || | ||||||| || || || || ||| ||||||| | Sbjct 4470621 GCAGGTCATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTGACTGA 4470562 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| | ||||||| || ||||| |||| Sbjct 4470561 GGCTCTCCCCTGCGCCCTTCTCGGCATGAACGCCGATCTCATGAAGCAGTACATCGAGTT 4470502 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTAACC 26248 || || |||| ||| ||| | || || || | ||||| ||| |||| |||| Sbjct 4470501 CGTCGCTGACCGTCTTCTGGTCGCCCTCGGCAACGAGAAGGTCTACAAGTCCGCC-AACC 4470443 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| | | Sbjct 4470442 CCTTCGACTTCATGGAGAACATCTCTCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGTG 4470383 Query 26309 TCGGCGACTATCA 26321 |||| ||||| || Sbjct 4470382 TCGGTGACTACCA 4470370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844602620480