Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 132 6e-25 seq10 127 2e-23 seq16 102 1e-15 seq12 91.5 2e-12 >seq11 Length=4934405 Score = 132 bits (146), Expect = 6e-25 Identities = 91/103 (88%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251 ||||||||||||||||||||||| || ||| |||| |||||| | || |||||||||||| Sbjct 2002019 AACTACCTCGACATCAAGCCTCTTCTTGATGTTGGCTGCAAGACCGTCGCCAACATGATC 2002078 Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||| || ||||||||||| ||||| || ||||||| Sbjct 2002079 AAGGGCAAGTCTCCTGAGGAGATCCGAAAGACATTCAACATCA 2002121 Score = 127 bits (140), Expect = 2e-23 Identities = 323/491 (66%), Gaps = 19/491 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| || || |||| ||| ||||| ||||||||||| | |||||||| Sbjct 3280860 CTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGGAGCATGGGGGTAACACCGTTGGA 3280919 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||| | || | ||| || | |||| || | ||| Sbjct 3280920 GGTACCGTTGGTACCGGCGATGTAAGAACCAGTGGCACGGATTCGGTGCACGTTCAGGCC 3280979 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || ||||| || || || || ||||| Sbjct 3280980 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGAGTATCATAAATACCCTC 3281039 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| || || ||||| || ||| || || || | || || Sbjct 3281040 AATACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGAGAGCTGGGGCTGGGGGGTACC 3281099 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || |||||||| ||||| | || ||||| |||| | ||||||| || ||| || Sbjct 3281100 CGCATTGAAGAGGGTGGGGGAGGCGTGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGT 3281159 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 |||| || ||| || | || | || || || ||||| || || Sbjct 3281160 CTCGAGGACACGC------------TCAATGTTGTCA---CCCCAGATGCCGACAGCCAC 3281204 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| ||||| || | ||| | |||| ||||| || Sbjct 3281205 ACGCATGATCATGTGCTGGGGGCGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAAGA 3281264 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA--GGAAAAGGCAAAATCGCGGTCGTGGCGGATG 1630542 || | |||| ||| ||||||||| || | || || || ||||| | | ||| Sbjct 3281265 TCGCTCAAGGGTCTTGAAGCCAAAGTATTGGTATTGG--AAGTCACGGTCATAGACAATG 3281322 Query 1630543 GCGGCGTCGAG 1630553 |||| ||| || Sbjct 3281323 GCGGAGTCTAG 3281333 Score = 86.0 bits (94), Expect = 8e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 1628374 CCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCG 1628433 |||||||| ||| |||||||| |||| ||||| | ||| | |||||| |||| Sbjct 3280633 CCGTAGCAGTCGGCGAGGCCGGGACACTCGTTGGGACACATGAGAGTCCAGTC---ACCG 3280689 Query 1628434 GTCACCGCGCGGCGC---ATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGC 1628490 || | || ||| || ||||| || |||| || || || |||||||| Sbjct 3280690 TTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGA 3280749 Query 1628491 GCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCG 1628550 || || ||||||||||||||||||||| ||||| || | || | | || ||| Sbjct 3280750 GCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCG 3280809 Query 1628551 TGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 ||||| ||||| |||||| ||||||||| || Sbjct 3280810 TGCCAGGGCTCAAGGTAGATGGCAAAGGCACC 3280841 >seq10 Length=5928648 Score = 127 bits (140), Expect = 2e-23 Identities = 189/260 (73%), Gaps = 15/260 (6%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-C 869268 |||| || ||||||||||| || |||||||||||||| |||||| | || || || | Sbjct 4470709 AAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATG--GAAGCAAAGGCAC 4470766 Query 869269 CG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGA 869327 || ||||||||| ||||||||||| || ||| | | ||| |||| ||||||| | || Sbjct 4470767 CGCTGAAAAAGATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGGGCAAAG--GAAGA 4470824 Query 869328 GGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCA 869384 | |||||| | |||||| || |||||||||||||| || | | | || | Sbjct 4470825 G----TCCTTGTCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGGA 4470880 Query 869385 CCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCG 869443 || || |||||| ||||||| ||| | | || || ||||||| ||||||||| Sbjct 4470881 TGGTCTCAATGGCGTTGAAGAGGTAGGTTC-GCTGGGAAGGCTCCTTGATATAGGTGTCA 4470939 Query 869444 ATCAGGAGCGAATAGGTCTC 869463 || || || || |||||||| Sbjct 4470940 ATGAGCAGGGAGTAGGTCTC 4470959 Score = 123 bits (136), Expect = 3e-22 Identities = 178/250 (71%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | || ||||| Sbjct 4470364 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGAGAGATG 4470423 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| ||||| | | Sbjct 4470424 TTCTCCATGAAGTCGAAGGGGTTGGCGGACTTGTAGACCTTCTCGTTGCCGAGGGCGACC 4470483 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||| ||||| |||||||||||||| |||||| ||||||||||||||| Sbjct 4470484 AGAAGACGGTCAGCGACGAACTCGATGTACTGCTTCATGAGATCGGCGTTCATGCCGAGA 4470543 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| ||| ||||| | ||| || |||||| || |||| Sbjct 4470544 AGGGCGCAGGGGAGAGCCTCAGTCAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATG 4470603 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 4470604 ATGT-CCTGG 4470612 >seq16 Length=3011660 Score = 102 bits (112), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1574058 CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCG 1574117 || ||| | || ||||||||| | |||| |||||||| || ||| || | || |||| Sbjct 1385207 CTACCGGCTGGCCGCCACAAGCTAGTCATTCTCGACGAAGCTGACAGCATGACCTCGGGC 1385266 Query 1574118 GCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTG 1574177 |||||||| || || || |||||||| | || |||||||||| || || || | Sbjct 1385267 GCCCAGCAAGCACTCCGACGAACCATGGAGATTTACTCCAACACGACTCGATTCGCTTTT 1385326 Query 1574178 GCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 || || ||| |||| | | |||||||| |||| ||| || |||||||||||||| Sbjct 1385327 GCCTGTAACCAGTCGAACAAGATCATCGAGCCCCTACAATCACGATGCGCCATTCTGCG 1385385 >seq12 Length=8749402 Score = 91.5 bits (100), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 || |||||||||||||||||||||||| | ||||| |||||||||||||| |||| Sbjct 6410325 GGTCTCGGCGAGCCGTGCTTTGACAAGCTTGAGGCTCTCCTCGCCCACGCCATCATGTCT 6410266 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || || || || ||||| || ||||||||| Sbjct 6410265 ATTCCTGCTACTAAGGGCTTTGAGATTGGC 6410236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137804900389