Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq11 122 8e-23 seq13 104 2e-17 >seq11 Length=4934405 Score = 122 bits (134), Expect = 8e-23 Identities = 448/697 (64%), Gaps = 11/697 (2%) Strand=Plus/Plus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||| ||||| ||||| || | ||||| ||||||||| ||| | || || |||| Sbjct 3280599 CTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCGGGACA 3280658 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || ||||||||||| | ||| | |||||| || ||| ||| ||||||| ||||| Sbjct 3280659 CTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATC 3280718 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481 |||||||| | ||| | | || ||||| || || ||| || ||| Sbjct 3280719 GGGAATCCAGAGAGCCAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTCTT 3280778 Query 139482 TTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGC 139541 || || |||||| ||||| || || |||||||| || || || |||||||| | || Sbjct 3280779 GCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGC 3280838 Query 139542 GCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAA 139598 || | | |||||||| |||||||||| ||| ||| || ||||| || || | Sbjct 3280839 ACCAGGTCGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGGAG 3280898 Query 139599 CATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGC 139655 ||| || | |||| | | || |||||||| | |||| | || || || Sbjct 3280899 CATGGGGGTAACACCGTTGGAGGTACCGTTGGTACCGGCGATGTAAGAACCAGTG---GC 3280955 Query 139656 TCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-T 139714 |||| || || || | ||| || || || | | ||||| || | | ||| | Sbjct 3280956 ACGGATTCGGTGCACGTTCAGGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGT 3281015 Query 139715 CGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATG 139774 | | | || || || ||||| || ||||| |||| ||| ||| || ||||||| Sbjct 3281016 CTTG-AGAGTATCATAAATACCCTCAATACTGTCCTCCTTCATGTCGACAAGGAAGCATG 3281074 Query 139775 ACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACA 139834 | || || || || | || || || || || || || ||||| ||||| | Sbjct 3281075 AGGAGAGCTGGGGCTGGGGGGTACCCGCATTGAAGAGGGTGGGGGAGGCGTGAGTGAAGA 3281134 Query 139835 TTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATAC 139894 | ||||||| | | ||| || |||| | | | | |||| | || ||| | Sbjct 3281135 ACTTGCTCGACATGAGGTTGTAAGTCTCGAGGACACGCTCAATGTTGTCACCCCAGATGC 3281194 Query 139895 CGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttt 139954 |||||| || ||||| | ||| || ||| || || | | | ||| || || || Sbjct 3281195 CGACAGCCACACGCATGATCATGTGCTGGGGGCGCTCAACAATCTTGCCATCAATCTTGA 3281254 Query 139955 tCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 || ||| ||| ||||||||| |||||||||| Sbjct 3281255 GGAGGTAAGATCGCTCAAGGGTCTTGAAGCCAAAGTA 3281291 >seq13 Length=4347623 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 2712023 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACTCTGGAGGTCGAGTCCAGC 2712082 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || || ||||| || Sbjct 2712083 GATACTATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAG 2712142 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || |||||||||||| | | | | || || || ||| Sbjct 2712143 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTCTCTGACTACAAC 2712202 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||||||||| || ||| | ||| Sbjct 2712203 ATTCAGAAGGAATCGACCCTGCACCTTGTG 2712232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897504396760