Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq10 156 7e-32 seq11 118 2e-20 seq16 102 1e-15 seq1 86.0 1e-10 >seq10 Length=5928648 Score = 156 bits (172), Expect = 7e-32 Identities = 216/296 (73%), Gaps = 15/296 (5%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGC-CCGA-GA 794434 || ||||||||||| || |||||||||||||| ||||||| | | || || ||| || Sbjct 4470715 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAA--GCAAAGGCACCGCTGA 4470772 Query 794435 AAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGC 794491 ||||||| ||||||||||| || ||| | ||||| |||| |||||| || |||| | Sbjct 4470773 AAAAGATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGT 4470832 Query 794492 CCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGT 794551 ||| |||||| || ||||| || ||||| || | | | || | || | Sbjct 4470833 CCTG------GATCCATCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCT 4470886 Query 794552 CGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGG 794610 | |||||| ||||||| ||| | || | || ||||||| |||||||| ||||| Sbjct 4470887 CAATGGCGTTGAAGAGGTAGGTTCG-CTGGGAAGGCTCCTTGATATAGGTGTCAATGAGC 4470945 Query 794611 AGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||||||||| ||||||||||| || || ||||||||| || || ||||| Sbjct 4470946 AGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 4471001 Score = 122 bits (134), Expect = 1e-21 Identities = 182/257 (71%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || || || || ||| |||||| |||||||||||||| | || Sbjct 4470357 GACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAG 4470416 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| |||||| | ||| |||||||| | | |||| ||||||| ||||| Sbjct 4470417 AGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCGGACTTGTAGACCTTCTCGTTGCCGAG 4470476 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 | | || || ||||| |||||||| || |||||||| |||||| |||||||||| Sbjct 4470477 GGCGACCAGAAGACGGTCAGCGACGAACTCGATGTACTGCTTCATGAGATCGGCGTTCAT 4470536 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||||| || || ||| || | ||| | | ||||| | ||| || |||||| || Sbjct 4470537 GCCGAGAAGGGCGCAGGGGAGAGCCTCAGTCAGGAACTCCTGCTCAATGGTGACGGCATC 4470596 Query 794132 GATGATGATCTGCCTGG 794148 ||||||| | ||||| Sbjct 4470597 AGTGATGATGT-CCTGG 4470612 >seq11 Length=4934405 Score = 118 bits (130), Expect = 2e-20 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2035653 AACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATC 2035712 |||||||||||||||||||| || || ||| | || ||||||||||| |||||| | ||| Sbjct 2002019 AACTACCTCGACATCAAGCCTCTTCTTGATGTTGGCTGCAAGACCGTCGCCAACATGATC 2002078 Query 2035713 AAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||| || ||||| ||||| ||||| || ||||||| Sbjct 2002079 AAGGGCAAGTCTCCTGAGGAGATCCGAAAGACATTCAACATCA 2002121 Score = 107 bits (118), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| ||||| |||||| |||| || || ||| | | Sbjct 3984189 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACAGCGTGCTTGGCAAGCTCACCGGGGAG 3984248 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||||||||| || | |||||||||||| |||| Sbjct 3984249 GATCAGGCGGACAGAGGTCTGGATCTCTCGGG 3984280 Score = 105 bits (116), Expect = 1e-16 Identities = 325/501 (65%), Gaps = 15/501 (3%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| || || || |||| ||| ||||| ||||||||||| || |||||||| Sbjct 3280860 CTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGGAGCATGGGGGTAACACCGTTGGA 3280919 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | || | ||| || | |||| || | ||| Sbjct 3280920 GGTACCGTTGGTACCGGCGATGTAAGAACCAGTGGCACGGATTCGGTGCACGTTCAGGCC 3280979 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| |||||| || | || || | || || || || || || ||||| Sbjct 3280980 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGAGTATCATAAATACCCTC 3281039 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| || ||| || || | | || || Sbjct 3281040 AATACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGAGAGCTGGGGCTGGGGGGTACC 3281099 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||||||||||| ||||| | || ||| | ||| |||||| | ||| || Sbjct 3281100 CGCATTGAAGAGGGTGGGGGAGGCGTGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGT 3281159 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 |||| || ||| | | | || ||| |||| || ||||| || || Sbjct 3281160 CTCGAGGACACGCTCAA-----TGTT----GTC-----ACCC-CAGATGCCGACAGCCAC 3281204 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||||||||||| |||||| ||||| || | | | | |||| ||||| || Sbjct 3281205 ACGCATGATCATGTGCTGGGGGCGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAAGA 3281264 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 || |||||| | ||||||||| ||| | ||| || || | | ||||| Sbjct 3281265 TCGCTCAAGGGTCTTGAAGCCAAAGTATTGGTATTGGAAGTCACGGTCATAGACAATGGC 3281324 Query 2074020 GGCGTCGAGGGCCTCCTTGTG 2074040 || ||| || |||||||||| Sbjct 3281325 GGAGTCTAGCTCCTCCTTGTG 3281345 >seq16 Length=3011660 Score = 102 bits (112), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 || ||| | |||||||||||| | |||| ||||| || || ||| || | || |||| Sbjct 1385207 CTACCGGCTGGCCGCCACAAGCTAGTCATTCTCGACGAAGCTGACAGCATGACCTCGGGC 1385266 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 |||||||| || |||||| |||||||| | ||| |||||||||| || || || | Sbjct 1385267 GCCCAGCAAGCACTCCGACGAACCATGGAGATTTACTCCAACACGACTCGATTCGCTTTT 1385326 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 ||||| ||| |||| | | ||||||| |||| || || |||||||| |||| Sbjct 1385327 GCCTGTAACCAGTCGAACAAGATCATCGAGCCCCTACAATCACGATGCGCCATTCTGCG 1385385 >seq1 Length=6466812 Score = 86.0 bits (94), Expect = 1e-10 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 |||||||| || |||||| | || || | ||||||||||| ||||| || |||||| Sbjct 1877824 ACCTTCCGTCTGAACCTGTCTGTCACATCTCCTTACAACGCCGATTTTGATGGTGACGAG 1877883 Query 429693 ATGAACCTGCACGTGCCCCAG-TCGGAGATGGCACGCGCCGAAGTC 429737 |||||||||||||| || ||| || ||| | | |||||||||||| Sbjct 1877884 ATGAACCTGCACGTTCCTCAGAGCGAAGA-GACTCGCGCCGAAGTC 1877928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244591632463