Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq12 140 2e-28 seq13 127 1e-24 seq17 96.9 2e-15 >seq12 Length=8749402 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||||||||||||||| ||||| ||||| ||| |||| |||| Sbjct 4927419 AGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 4927360 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| |||||||| | || | ||||||||||| Sbjct 4927359 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 4927300 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| |||||| Sbjct 4927299 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 4927240 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| || ||||||||||| Sbjct 4927239 TTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 4927208 >seq13 Length=4347623 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| |||||||||||||| ||||| || ||| |||| |||| Sbjct 2712234 AGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCATCC 2712175 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||| ||||| |||||||| | || | ||||||||||| Sbjct 2712174 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 2712115 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || |||| || || ||| |||||| || | || || Sbjct 2712114 TGAATCTTGGACTTCAC--AT--TATCAATAGTATCGCTGGACTCGACCTCCAGAGTGAT 2712059 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||| ||||| |||||||||||||| Sbjct 2712058 TGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 2712023 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | |||| ||||||||||||||| ||||| | ||| |||| |||| Sbjct 2711778 AGAACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCC 2711719 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| || ||||| || | || | ||||||||||| Sbjct 2711718 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 2711659 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | |||| || | ||| || || | ||| || ||| Sbjct 2711658 TGGATCTTTGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 2711599 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || || || |||||||| || Sbjct 2711598 TTGCCAGTCAGGGTCTTGAC 2711579 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || | || | || Sbjct 2712006 AGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCC 2711947 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || |||||||| ||||| || ||||| | || | || ||||| || Sbjct 2711946 TCGAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCC 2711887 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | || || |||| ||| |||||| Sbjct 2711886 TGAATCTTCGACTTCACGTTATCGATCGTGTCGGATGATTCCACCTCAAGGGTGATGGTC 2711827 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || ||||| ||||| Sbjct 2711826 TTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2711795 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||||||||| || || || || || ||| |||| |||| Sbjct 2711500 AGGACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGGCCATCC 2711441 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| ||||| || ||||| || | || | ||||||||||| Sbjct 2711440 TCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC 2711381 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| ||| || ||| || || | ||| || Sbjct 2711380 TGAATCTTCGACTTGAC--AT--TGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGAT 2711325 Query 34942 GGTCTTTCCCGT 34953 |||||| ||||| Sbjct 2711324 GGTCTTGCCCGT 2711313 >seq17 Length=2611553 Score = 96.9 bits (106), Expect = 2e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || | || |||| || || ||||| || ||||||| Sbjct 1259121 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 1259180 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||||||| ||||| || | || | ||||||||||| | || || ||||| Sbjct 1259181 TCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1259240 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | || || |||||| || | ||| |||||||| ||||| |||||||| || | Sbjct 1259241 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1259300 Query 34968 A 34968 | Sbjct 1259301 A 1259301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692732520523