Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq13 116 3e-21 seq12 107 2e-18 seq1 84.2 2e-11 >seq13 Length=4347623 Score = 116 bits (128), Expect = 3e-21 Identities = 130/171 (76%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| ||||| | ||| || | || || |||||||| || ||||| Sbjct 2711758 CTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 2711699 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | ||||| || |||||||||| ||||||| ||| | || Sbjct 2711698 GATCAGGCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGA-CGT 2711640 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 || | | ||||||| || |||||||| | ||||| || || || |||| Sbjct 2711639 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCA 2711589 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | | ||| || | || |||||||||||||| ||||| Sbjct 2712213 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 2712154 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | || | | |||||||||| ||||| ||||| | | Sbjct 2712153 ATAAGTCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACATTA 2712094 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||||| || || ||||||| ||||| || || || || | ||| || ||| Sbjct 2712093 TCAATAGTATCGCTGGACTCGACCTCCAGAGTGATTGTCTTTCCAGTGAGAGTCTTGACA 2712034 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 2712033 AAGATCTGCAT 2712023 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||| | ||||| |||| || || ||||| || || || Sbjct 2711986 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCGAA 2711927 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||| ||||| | ||||| | ||||| ||| ||||| ||||| | Sbjct 2711926 GATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCCTGAATCTTCGACTTCACGTT 2711867 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||| ||||||||||| | ||||| || || || || | ||| || || Sbjct 2711866 ATCGATCGTGTCGGATGATTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGAC 2711807 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 2711806 GAAGATTTGCAT 2711795 >seq12 Length=8749402 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| ||| || ||| || | || || |||||||| || Sbjct 4927404 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 4927345 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| || | ||||||||||| | || | || |||||||||| |||||| ||| Sbjct 4927344 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 4927285 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | |||| | | |||||| || |||||||| | ||||| || || ||||| | || Sbjct 4927284 A-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGT 4927226 Query 35719 TTTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 4927225 CTTGACGAAGATCTGCAT 4927208 >seq1 Length=6466812 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/183 (70%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 41171 TGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTC-- 41228 ||| |||||||||||| | ||||| |||| ||| || |||| | | | | ||||||| Sbjct 3850530 TGTAGATGCGCTCGAGAACGAGCTGGGCGATACGGTCGCCCTCCTTGATCTCAAAGTCGG 3850589 Query 41229 -CACGTCGTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGA 41287 | || ||| |||| | | || || || | ||| ||||||||| ||||||| Sbjct 3850590 ACTCGCCGTGGTTGAAGAGAAGGACCTTGACC---TGGCCTCTGTAGTCGGCGTCGATGA 3850646 Query 41288 CGCCAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTAC 41347 ||||||| | ||||||| |||||| | || || || |||||||| ||||| | | Sbjct 3850647 CGCCAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGACCAGATCGGGGAGCGATGCGGC 3850706 Query 41348 CGT 41350 ||| Sbjct 3850707 CGT 3850709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793504206360