Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq10 104 7e-17 seq11 98.7 3e-15 >seq10 Length=5928648 Score = 104 bits (114), Expect = 7e-17 Identities = 357/546 (65%), Gaps = 17/546 (3%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || ||||| ||||||||||||||| |||||||| | ||| |||||| | || || Sbjct 4471181 TTCTGGACTGCGGAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACAACCGCCTG 4471122 Query 443397 TCTAGCCATGAACGCGATTTCTTCAAATG---CATCTTGGCCTTCTTTGCACCGAGCGAC 443453 | | | || | | ||||||| | ||| | ||||||||||| | ||| Sbjct 4471121 ACCTCCGACGAGC---AGTTCTTCATCTCTCACATTCTTGCCTTCTTTGCCGCCTCTGAC 4471065 Query 443454 GGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCC 443513 || |||||| ||||| || || ||| ||| || ||| | | ||||||| Sbjct 4471064 GGCATCGTCAACGAGAACCTTGTTGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCT 4471005 Query 443514 CGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAG 443573 || | |||||||| ||||| | ||||||||||| ||| ||||| |||| | | Sbjct 4471004 CGATGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTG 4470945 Query 443574 TTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGTTCAT 443632 | || | || ||| || || || ||||| || | ||| || || ||| Sbjct 4470944 CTCATTGACAC-CTATATC--AAGGAGCCTTCCCAGCGAACCTACCTCTTCAACGC-CAT 4470889 Query 443633 ---GACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGA 443689 ||||| || ||||| | ||| | |||||| | | ||| || | || | Sbjct 4470888 TGAGACCATCCCTTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAG-GACA 4470830 Query 443690 AAATCTCAGC-TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTA 443748 | ||| | || | | |||| || || || || |||| ||||| || | || || | Sbjct 4470829 AGGACTCTTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTTTTCA 4470770 Query 443749 GCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACC 443808 |||| |||| || |||||||||||| | || |||||||| || |||| |||||||||| Sbjct 4470769 GCGGTGCCTTT-GCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACC 4470711 Query 443809 TTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTC 443868 || |||||| | || ||| || |||||| | || |||||| ||||| || ||| Sbjct 4470710 TTCTCTAACGAGTTAATATCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGCCTCCTC 4470651 Query 443869 TACACC 443874 || || Sbjct 4470650 CACTCC 4470645 >seq11 Length=4934405 Score = 98.7 bits (108), Expect = 3e-15 Identities = 202/294 (69%), Gaps = 20/294 (7%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| ||||||| ||||||||| || || ||||||||||| || ||| || || Sbjct 3280904 CCCATGCTCCGTGTCTTCAACAACACTGCCCGATACGTCGATCAGGGTGGCAATAAGCGA 3280845 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTT--TT 255095 || || || || |||||||||| ||||| |||||||| || | |||| ||| || Sbjct 3280844 CCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCAGATGTCTTTGA---GTTCCTT 3280788 Query 255096 TACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155 || ||| | | || ||||| |||||| | ||| |||||| | | | ||| Sbjct 3280787 GAC--CTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCGACCTGTTCCTGGCTC 3280730 Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA-----GACCTGGAGCCT 255210 ||||| |||||| || || || ||||| ||||| || || ||||| || Sbjct 3280729 TCTGGATTCCCGATCTCTTCAT--GAAGCGTG--TCGAGAAGAACGGTGA-CTGGACTCT 3280675 Query 255211 CATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264 ||||||||||||| | ||||| || | ||||| | ||||| ||||| || Sbjct 3280674 CATGTGTCCCAACGAGTGTCCCGGCCTCGCCGACTGCTACGGTGAGGAGTTCGA 3280621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335654040565