Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11 264 1e-65 seq16 84.2 3e-11 seq12 84.2 3e-11 seq10 84.2 3e-11 >seq11 Length=4934405 Score = 264 bits (292), Expect = 1e-65 Identities = 969/1492 (65%), Gaps = 43/1492 (3%) Strand=Plus/Plus Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 ||||| || |||||| | | | | ||||| || | || || || || ||||| || Sbjct 3279820 AACTCGCCAGCGAGGACACGACGCTGATAGATATTGGAGGTATAAGGCTCGAAGCACTCG 3279879 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 || ||||||| ||| || | ||| || || ||||| || || | || |||||||| Sbjct 3279880 TTGTTACCCAGGATCTGCGAAGTGCTAGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTG 3279939 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTG--AGCTTGG 110858 || ||| | |||||||| | ||| ||||| |||||||| || | || || Sbjct 3279940 CGGGTACCATGCTCCTTGACCTGCTCCCTGAGAGACTCCCAGTCCCAGAGGTCAGAG-GG 3279998 Query 110859 TTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGG 110918 ||||| |||| ||||||| ||||| || | || | || |||||||| |||| |||| Sbjct 3279999 CTTCACTTTCC-ACATGTCGAACTGGAGAATACCCTCAGAGGCGGGAGAGCCCTTGAAGG 3280057 Query 110919 TTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATAC 110977 | |||| ||| | | | || | | ||| | || |||| || || || Sbjct 3280058 TGGAGTAGGGACCCTCCTCCTTGGCGAGCTGCACGGAA-GCAGTGAGGGCAGCATGGTAG 3280116 Query 110978 ATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCG 111036 ||||| |||||||| | |||| ||| || ||| || || ||| || | ||| Sbjct 3280117 ATGGTCTCAAAGATCTGCTTGTTCAGCTCTCGAGCCTCAGGAGACTCGAAAGGCAT-GCG 3280175 Query 111037 GCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCA 111095 || | || || |||| || ||||| || ||||| | |||||| || | |||||||| Sbjct 3280176 -CAGAGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACACCAATGGGCCGGTGTCGCA 3280234 Query 111096 TATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTA 111152 | || || | ||| || ||| ||||| || || || |||| | ||| | Sbjct 3280235 TGTTG--CTGTTGCG-AGCTTCAGGAACGGGGTAGTGGTTCACATCGATGATCCTGTTCA 3280291 Query 111153 GATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCT 111212 | || ||| ||| ||||| || || || || | | ||| | || | || Sbjct 3280292 GGTTGCGAACGACAGTCTGTGTGACCTCGTGTAGCTTCTGGAAGTCATA---GCAGGCCT 3280348 Query 111213 CTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 | || | ||| | |||||||||| || || | ||||| ||||| ||||| Sbjct 3280349 CGTCGTAGTTGATGAAAGAGGGAAGGGCGAGGGAGGCAAGGTTGCAGACAGCAACCTCAT 3280408 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 | | |||||| | ||| || || || | |||||| || ||| || || | | Sbjct 3280409 CAGGGGCACAGTACTCGATAATCTCGGTGCAAAGGTTGGAGCTGCGAATGGTACCAAGGT 3280468 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 |||| ||||| ||||| |||||| |||||||||||||||| |||| | || |||| Sbjct 3280469 TCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCAGTCT 3280528 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG-- 111446 | ||||| | | ||| || || | ||| | | || | | || |||| ||| Sbjct 3280529 CAGTCTGAGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTC----ATGGTCTTGCGA 3280584 Query 111447 CCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCG 111505 ||| | || || ||| ||||| ||| || || || ||||||||||| |||| Sbjct 3280585 CCCTTACCAGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCG 3280644 Query 111506 GAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGC 111565 | ||| || || || || ||||| | |||| ||| | ||| | ||| || ||| Sbjct 3280645 GCGAGGCCGGGACACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACACGC 3280704 Query 111566 TTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCG 111625 |||||||| || || |||||||| || | || || || | | ||| |||| || Sbjct 3280705 TTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGAGCGCGAACCTCCTCC 3280764 Query 111626 TCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGA 111685 | || ||||| || | ||||||||||| | || ||| |||||||| |||||||| Sbjct 3280765 TTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGG 3280824 Query 111686 TAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCG 111742 |||| || | | || ||| | ||| | |||| || || || || ||| | Sbjct 3280825 TAGATGGCAAAGGCACCAGGTCGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTG 3280884 Query 111743 TTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGA 111802 || || || || ||||| || ||| ||| | || ||| || || || || | Sbjct 3280885 TTGAAGACACGGAGCATGGGGGTAACACCGTTGGAGGTACCGTTGGTACCGGCGATGTAA 3280944 Query 111803 GATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATT 111862 || | |||| | | || | || || |||||||| |||||| ||| || || Sbjct 3280945 GAACCAGTGGCACGGATTCGGTGCACGTTCAGGCCAATACCACCAGCCATCTTGGAAATC 3281004 Query 111863 TGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATA 111922 ||||| | | ||||| |||| ||||| | || ||||||||| || ||| | Sbjct 3281005 ATGGCACAAGTCTTGAGAGTATCATAAATACCCTCAATACTGTCCTCCTTCATGTCGACA 3281064 Query 111923 AGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCG 111982 |||||||| ||| | ||| || || ||||| |||||||||||||| || | ||| Sbjct 3281065 AGGAAGCATGAGGAGAGCTGGGGCTGGGGGGTACCCGCATTGAAGAGGGTGGGGGAGGCG 3281124 Query 111983 TGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTT 112040 ||| ||| | | |||| ||||| || ||| ||||| | |||| ||||||| | Sbjct 3281125 TGAGTGA--AGAACTTGCTCGACATGAGGTTGTAAGTCTCGAGGACACGCTCAATGTTGT 3281182 Query 112041 CCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGC 112100 | || |||||||| || || ||||||| ||||| ||| ||| || | | ||| Sbjct 3281183 CACCCCAGATGCCGACAGCCACACGCATGATCATGTGCTGGGGGCGCTCAACAATCTTGC 3281242 Query 112101 CATCGAGCCGTTGAAGA---TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 |||| | | |||| || || || ||||||||| |||| |||||||| Sbjct 3281243 CATCAATC--TTGAGGAGGTAAGATC-GCTCAAGGGTCTTGAAGCCAAAGTA 3281291 >seq16 Length=3011660 Score = 84.2 bits (92), Expect = 3e-11 Identities = 187/274 (68%), Gaps = 10/274 (4%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||| ||||||||||| |||| || || || || | ||| | | | || || Sbjct 1569115 GCATCGATCTCATCAATAAAGATGATGCAAGGAGCGTTCTTACGGCCTTCTGCGAACAGG 1569056 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGC 11747 || || || | | ||| ||||| ||||||||||| || || | | | || | | Sbjct 1569055 TCTCGCACACGAGAAGGACCAACACCCACAAACATCTCGACGAACTCAGAACCGCTCA-C 1568997 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 |||| | ||| ||||| || || || || |||| |||||| || ||||| |||| Sbjct 1568996 ACTGAA-GAAGGGGACTCCAGACTCGCCAGCCGTGGCCTTGGCGAGCAGTGTCTTACCCG 1568938 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTC-CAAAAT 11864 |||| || ||| || |||| || |||||||||||||||||||| |||| | || | Sbjct 1568937 TACCAGGGGGACCAGCTAGAATTGCTCCTCGGGGGATCTTGGCACCGAGCTTCTCGAACT 1568878 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||||||| ||||| | || ||||| ||| Sbjct 1568877 ---TCTCGGGCTGCTTCAAGAAGCTCACAAACTC 1568847 >seq12 Length=8749402 Score = 84.2 bits (92), Expect = 3e-11 Identities = 162/238 (68%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 181811 ACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGA 181870 |||||| ||| || | ||| || | |||| |||||| || ||| ||||||||||| Sbjct 2274833 ACCACCGGCGAGTCGAGAACCGAAGTTTCCACTTGGCTCCAGGCAGTTGATGTTGTTTGA 2274892 Query 181871 ACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTG 181930 || | ||| | ||||| || |||||| | || ||| | ||||||||||| Sbjct 2274893 TCCCACAAAGTTCTGGGCCAGGCCAATGATGGTCTGTTGGAGAGACGCCTCACCGTGGTG 2274952 Query 181931 GTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATCTTTG-- 181988 ||| |||| || || | ||||| | ||||| | | |||||| | ||| ||| Sbjct 2274953 GTATGCTGTCTGTTCAGACACATAACCAGCCAATTCCACGACCTTC---TTATCCTTGAC 2275009 Query 181989 -AGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATCC 182045 ||||| | | ||||||||| || | ||| || | ||| |||||||| |||||| Sbjct 2275010 CAGGTTTCTCTTGAAGCAAGCGTAGAGCACCTTGCGCTGACCAGGCTTGAAGCCATCC 2275067 >seq10 Length=5928648 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||||||||| || || || | || || |||||| ||||| Sbjct 4470660 GGCAAAGTCGGTGTGAAGACCCTCATCACGAGATATTAACTCGTTAGAGAAGGTCAGACC 4470719 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 ||||||||||| |||||||| | ||| | || | ||| || | ||| ||| |||| Sbjct 4470720 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCGCTGAAAAAGA 4470778 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCA 122835 ||||||| || || || |||| || || | ||| ||||| ||| | ||| | | Sbjct 4470779 TACCCTCGACGGCAGCGAAGGCAACGAGACGCTGGGCAAAGGA-AGAGTCCTTGTCCTGG 4470837 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTT 122864 | |||| || ||||| | |||||||| Sbjct 4470838 ATCCATCGGATGGCCCAGTCGGCCTTCTT 4470866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031866543200