Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 288 1e-72 seq10 109 6e-19 seq16 89.7 6e-13 seq1 86.0 7e-12 >seq11 Length=4934405 Score = 288 bits (318), Expect = 1e-72 Identities = 929/1426 (65%), Gaps = 41/1426 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| ||||| |||| || || || ||||||| ||| Sbjct 3281226 CCCCCAGCACATGATCATGCGTGTGGCTGTCGGCATCTGGGGTGACAACATTGAGCGTGT 3281167 Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338 | | ||||| ||| || ||||| |||| | | ||| |||||| | || |||||| Sbjct 3281166 CCTCGAGACTTACAACCTCATGTCGAGCAAGTTCT--TCACTCACGCCTCCCCCACCCTC 3281109 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 |||||||| ||||| || ||||| | ||| ||||||||| ||| || |||||| Sbjct 3281108 TTCAATGCGGGTACCCCCCAGCCCCAGCTCTCCTCATGCTTCCTTGTCGACATGAAGGAG 3281049 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | ||||| |||| ||||| | | ||||| || || ||| |||| Sbjct 3281048 GACAGTATTGAGGGTATTTATGATACTCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 3280989 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || |||||||| || || | || | | |||| | ||| || || || Sbjct 3280988 GGTGGTATTGGCCTGAACGTGCACCGAATCCGTGCCACTGGTTCTTACATCGCCGGTACC 3280929 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || ||| || | ||| ||| || ||||| || || || ||| ||| || || || Sbjct 3280928 AACGGTACCTCCAACGGTGTTACCCCCATGCTCCGTGTCTTCAACAACACTGCCCGATAC 3280869 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || |||| | ||| | ||| || | | || |||| |||||||| |||||| Sbjct 3280868 GTCGATCAGGGTGGCAATAAGCGACCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCAC 3280809 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGGT 104693 || ||| || | ||||||||||| |||| ||||| || | ||||||| |||| | Sbjct 3280808 GCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCT 3280749 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||||| || ||| |||||||||||||| ||||||||||||||| | || ||| ||| Sbjct 3280748 --CGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGA 3280691 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 || | ||| ||||| | ||||| || || || || ||| |||| | |||| Sbjct 3280690 ACGGTGACTGGACTCTCATGTGTCCCAACGAGTGTCCCGGCCTCGCCGACTGCTACGGTG 3280631 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAG------AAGGTCGGGCGACTGCGA 104867 ||||||| || || || ||| ||||| ||| | | | ||||| ||| || Sbjct 3280630 AGGAGTTCGAGGCTCTGTACGAGAAGTATGAGAAGGCTGGTAAGGGTCGCAAGACCATGA 3280571 Query 104868 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || |||| || | ||| | || || ||| || |||| || |||||||| | | Sbjct 3280570 AGG-CCCAGAAGC-----TCTGGTATGCCATCCTCGAGGCTCAGACTGAGACTGGCAACC 3280517 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||| ||||| || ||| |||| ||||| || || ||||| | ||| | Sbjct 3280516 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 3280457 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 | || ||||| || || || || || | || | | | |||||| |||| Sbjct 3280456 TTCGCAGCTCCAACCTTTGCACCGAGATTATCGAGTACTGTGCCCCTGATGAGGTTGCTG 3280397 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC--CAGAGACAAAGAC--A 105103 | || ||||| || || |||| || ||| | | | ||| | ||| | | | Sbjct 3280396 TCTGCAACCTTGCCTCCCTCGCCCTTCCC---TCT-TTCATCAACTACGACGAGGCCTGC 3280341 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | ||| | | || || ||||| || || | |||||| ||||| ||||| | Sbjct 3280340 TATGACTTCCAGAAGCTACACGAGGTCACACAGACTGTCGTTCGCAACCTGAACAGGATC 3280281 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 || ||| || ||||||||| ||||| || || ||| ||||||| || Sbjct 3280280 ATCGATGTGAACCACTACCCCGTTCCTGAAGCTCGCAACAGCAACATGCGACACCGGCCC 3280221 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTT-G 105281 |||||| ||||||| |||||||| || |||| ||| || || || || || || ||| | Sbjct 3280220 ATTGGTGTCGGTGTCCAGGGTCTTGCCGATGCTTTCCTTGCTCTG-CG-CATGCCTTTCG 3280163 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || || || || | || || || ||||||||||| || || || || | Sbjct 3280162 AGTCTCCTGAGGCTCGAGAGCTGAACAAGCAGATCTTTGAGACCATCTACCATGCTGCCC 3280103 Query 105342 TTGAGGCGAGTTCAG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 | || ||| | || | || ||| || ||||| || ||||| |||| | Sbjct 3280102 TCACTGC---TTCCGTGCAGCTCGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCT 3280046 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 105458 |||| || || | || | || || || || |||||| ||| || || | || Sbjct 3280045 CTCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAAAGTGAAGCCCTCTGACCTCT 3279986 Query 105459 ACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 |||||||| |||||| ||| | |||||||| | ||| || |||||||| || Sbjct 3279985 GGGACTGGGAGTCTCTCAGGGAGCAGGTCAAGGAGCATGGTACCCGCAACAGTCTGCTGC 3279926 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 | || || ||||| || || ||| | || ||| ||||||| || || ||||| || | Sbjct 3279925 TTGCCCCCATGCCCACTGCTAGCACTTCGCAGATCCTGGGTAACAACGAGTGCTTCGAGC 3279866 Query 105579 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 105624 | || || | || ||||||| | | | |||||| || ||||| Sbjct 3279865 CTTATACCTCCAATATCTATCAGCGTCGTGTCCTCGCTGGCGAGTT 3279820 >seq10 Length=5928648 Score = 109 bits (120), Expect = 6e-19 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCA 94730 ||||| |||| ||||| ||||| | | || ||| | | ||||| | ||||| | Sbjct 4470944 CTCATTGACACCTATATCAAGGAGCCTTCCCAGC-GAACCTACCTCTTCAACGCCATTGA 4470886 Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 94789 || | || || || | ||||| || || ||||| || ||| | | |||| | Sbjct 4470885 GACCATCCCTTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGGA 4470826 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | | ||||||||| |||| ||| | || || || || ||||||||||| ||| | Sbjct 4470825 CTC-TTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTTTTCAGCG 4470767 Query 94850 GTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 || |||| ||| | || | |||||||||||||| ||||||||||| ||||| |||| Sbjct 4470766 GTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTC 4470708 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || |||||| | || |||||||| ||||| || ||| || ||||| Sbjct 4470707 TCTAACGAGTTAATATCTCGTGATGAGGGTCTTCACACCGACTTTGC 4470661 >seq16 Length=3011660 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||| ||||||||||| |||| |||||| || || | || | || | || || Sbjct 1569116 GGCATCGATCTCATCAATAAAGATGATGCAAGGAGCGTTCTTACGGCCTTCTGCGAACAG 1569057 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 || || ||||| | || ||||| ||||||||||| || || | | || || Sbjct 1569056 GTCTCGCACACGAGAAGGACCAACACCCACAAACATCTCGACGAACTCAGAACCGCTCAC 1568997 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | || | ||||||||| ||| || || || |||| |||||| || |||||||||| Sbjct 1568996 ACTGAA-GAAGGGGACTCCAGACTCGCCAGCCGTGGCCTTGGCGAGCAGTGTCTTACCCG 1568938 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||| || ||| || || | || ||||| || |||||||| || Sbjct 1568937 TACCAGGGGGACCAGCTAGAATTGCTCCTCGGGGGATCTTGGCACC 1568892 >seq1 Length=6466812 Score = 86.0 bits (94), Expect = 7e-12 Identities = 221/332 (67%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGA 9752 ||| | ||| |||| ||||||||||||||| ||| || ||| || || |||| Sbjct 5389544 TCCAATGGCGTCAAGCTCATCAATGAAGACAATGGCGGGAGACTTGGACTTGGC-AGCG- 5389601 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 ||||| || || || |||||||| || ||||| ||||| ||||| |||| | Sbjct 5389602 --GTGAAGAGCTCGCGAACTCGCTTGGCTCCGACACCCACAAAGATCTCATCAAA-CTCA 5389658 Query 9813 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 | | |||| | || |||||| ||| | |||||| |||| ||||| |||||||| Sbjct 5389659 CTACCAGACATGTAGAAGAAGGGAACACCGGCTTCACCAGCAACAGCTCGAGCGAGAAGC 5389718 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 9931 ||||| || ||||| || || | ||||| |||| || | |||||| ||| Sbjct 5389719 GTCTTTCCGGTACCGGGAGGGCCAACTAGGAGAACACCCTTGGGTAACTTGGCACCAAGG 5389778 Query 9932 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCG 9991 | | | |||| || | ||| ||||| || |||| || | | || || ||||| Sbjct 5389779 TCGCTGAACTTCTCGGGGTTCTTGAGAAACTCGACAACCTCCTGAAGCTCCTCCTTGGCC 5389838 Query 9992 GCGTCAATCCCCTCAACATCGGTAAACCGGGT 10023 | ||| || | |||||| | || ||||| Sbjct 5389839 TCATCACAGCCGTGGACATCGCTGAATCGGGT 5389870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260676057080