Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq13 156 1e-32 seq1 141 3e-28 >seq13 Length=4347623 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || ||||||||||| || || || || || || Sbjct 2712025 CATACCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 2711966 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | ||||| || || || ||||| || ||||| ||||| || || || || ||||| Sbjct 2711965 GCTGAGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGG 2711906 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||||||||| ||||||||||| || | || || ||||| |||| || |||| ||| Sbjct 2711905 AGGAATTCCTTCCTTATCCTGAATCTTCGACTTCACGTTATCGATCGTGTCGGATGATTC 2711846 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | |||||||| || || || || || || || ||||| Sbjct 2711845 CACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2711795 Score = 132 bits (146), Expect = 1e-25 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || ||||| || || || || || || ||||| || || Sbjct 2712256 TTACTGACCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTA 2712197 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||||| | || || ||||| || || || || ||||||||||| || || ||||| || Sbjct 2712196 GTCAGAGAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTC 2712137 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 || || || || || || |||||||| || | || ||||||||||| | ||| | ||| Sbjct 2712136 GGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACATTATCAATAGTATC-GCTGG 2712078 Query 140684 -TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||||||| || || || || ||||| |||||||| Sbjct 2712077 ACTCGACCTCCAGAGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 2712023 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || ||||| ||||| ||||| || || ||||| ||||| Sbjct 2711519 CATGCCACCACGGAGACGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAATC 2711460 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || || || || || || || ||||||||||| Sbjct 2711459 GGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGG 2711400 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || ||||| || || | |||||| | || Sbjct 2711399 AGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTC 2711340 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || | ||||| || || Sbjct 2711339 AACCTCGAGGGTGATGGTCTTGCCCGT 2711313 Score = 118 bits (130), Expect = 3e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | ||||| || || || || ||||| || ||||| || | Sbjct 2711801 TTTGCATACCACCGCGAAGGCGGAGAACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGT 2711742 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || ||||| ||||| || || ||||||||||| || || ||||||| Sbjct 2711741 AGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGAT 2711682 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| || || || ||||| || || | || || || || |||| || || | Sbjct 2711681 CAGGAGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGAAG 2711622 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || || | ||||| || || || || || || Sbjct 2711621 ACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGAC 2711579 >seq1 Length=6466812 Score = 141 bits (156), Expect = 3e-28 Identities = 439/675 (65%), Gaps = 12/675 (2%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || || | ||| | || ||||| Sbjct 2289247 GACATTATCGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 2289188 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| |||||| | || || || || | ||| || || | || || Sbjct 2289187 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTTGCCATGAACCCCACCAACACT 2289128 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATC 349437 || || ||||| ||||| | || ||| | | || | ||| | || || | Sbjct 2289127 GTCTTCGATGCCAAGCGTTTGATCGGTCGCAAGTTCGCCGACCCTGAGGTC----CAGGC 2289072 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || || || || | | | || | ||| |||| || || || || || Sbjct 2289071 CGACATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGTGGCAAGCCTATCATCGA 2289015 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 |||||| | || || || || || || ||||| || || || || |||||| | Sbjct 2289014 GGTTGAGTTCAAGGGCGAGCAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGGTTCT 2288955 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || ||| || | || || | || | ||||| || || | | | ||||| | Sbjct 2288954 CACCAAGATGCGAGAGACCGCCGAGTCTTACCTCGGTGAGACCGTCAATAACGCTGTCGT 2288895 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || ||||| || || || | |||||| || || || ||||| || ||| Sbjct 2288894 CACCGTTCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTCAT 2288835 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | || ||||| |||| || || || || || || || || ||||| ||||| Sbjct 2288834 TGCTGGCCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCCGCTGCCATTGCCTATGG 2288775 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | || || || || | || || || ||| | ||||||||||| Sbjct 2288774 TCTCGACAAGAAGATCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTAC 2288715 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || | || |||| ||||| || || || || || | ||||| || Sbjct 2288714 CTTCGATGTTTCTCTCTTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGG 2288655 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| || ||||| || || ||||| || || || || || || Sbjct 2288654 TGACACTCACTTGGGTGGTGAGGATTTCGACAACCGTCTGGTCAACCACTTCGTCAATGA 2288595 Query 349918 ATTTAAGCGTCAAGC 349932 || ||||| ||||| Sbjct 2288594 GTTCAAGCG-CAAGC 2288581 Score = 118 bits (130), Expect = 3e-21 Identities = 173/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 378202 TCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCA 378261 ||||| | || || | |||||||| ||||||||| || | ||| || |||||| Sbjct 1878965 TCTTCCAGAGCCTTGACCAGTCGTCGCTGAATATAACCTGTCTCGGCAGTCTTGACTGCA 1878906 Query 378262 GTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGT 378321 |||||||| | ||| | |||||| |||| || |||||||| || || | |||||| || Sbjct 1878905 GTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGGAAGGAGTCAGA 1878846 Query 378322 CCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTA 378381 |||| || | || |||| | || || | || | ||||| | ||||| || || Sbjct 1878845 CCACGAAGGTACGAGTTCTCGACGAAACCACGAGCTTCGGGCGAGTAATCATCCTTGGTG 1878786 Query 378382 TAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGT 378441 |||| || | ||| |||| || || ||| | ||||| || ||||| || ||| |||| Sbjct 1878785 AAATGGGGCAGTGTGCGATACTTGAATCCAAAGGGAATACGCTTTCCTTCGACAATCTGC 1878726 Query 378442 TGACC 378446 ||||| Sbjct 1878725 TGACC 1878721 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | |||||||| || ||||| || || Sbjct 1879727 CGGGGCACACCCAGAGTGACGTTC---TTGGAAGACACACCAGCGAAATGGAATGTGTTC 1879671 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| ||||||||||| ||||| || || | ||| ||||||||||| Sbjct 1879670 AGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGAGCAGCCAAAACACCAACCATTTCA 1879611 Query 377578 CCAGGATTGACAA 377590 ||||| |||||| Sbjct 1879610 CCAGGGCTGACAA 1879598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254069958651