Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11 246 3e-60 seq12 152 6e-32 >seq11 Length=4934405 Score = 246 bits (272), Expect = 3e-60 Identities = 516/761 (68%), Gaps = 30/761 (4%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | || ||| |||||| || |||||||| ||||| ||| Sbjct 3281212 TCATGCGTGTGGCTGTCGGCATCTGGGGTGACAACATTGAGCGTGTCCTCGAGACTTACA 3281153 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| |||| ||| || |||||| | || ||||| ||||| || |||| Sbjct 3281152 ACCTCATGTCGAGC---AAGTTCTTCACTCACGCCTCCCCCACCCTCTTCAATGCGGGTA 3281096 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || || ||| | || |||||||| || | |||||||| ||| || || | Sbjct 3281095 CCCCCCAGCCCCAGCTCTCCTCATGCTTCCTTGTCGACATGAAGGAGGACAGTATTGAGG 3281036 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | || || || || |||||| |||||| || |||||| | | |||||||| || Sbjct 3281035 GTATTTATGATACTCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCC 3280976 Query 53430 TCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 | || ||| | ||| ||||||| | || | ||| || || ||||| | | Sbjct 3280975 TGAACGTGCACCGAA--TCCGTGCCACTGGTTCTTACATCGCCGGTACCAACGGTACCTC 3280918 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || | || |||||||| |||||||||||||| ||||| |||||| | ||||| Sbjct 3280917 CAACGGTGTTACCCCCATGCTCCGTGTCTTCAACAACACTGCCCGATACGTCGATCAGGG 3280858 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| || | || ||||||||||| ||||| |||||||| || | | Sbjct 3280857 TGGCAATAAGCGACCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCAGATGTCTT 3280798 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||||| || || ||||| ||| || || | || ||| | ||| || |||||||| Sbjct 3280797 TGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCGACCTGTT 3280738 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||||| |||||||| || ||||||||| | || |||||| ||| || ||| Sbjct 3280737 CCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGTGACTGGAC 3280678 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGT------ 53780 || ||||| || |||||||| ||||||||| | | || |||||||||||||| Sbjct 3280677 TCTCATGTGTCCCAACGAGTGTCCCGGCCTCGCCGACTG-CTACGGTGAGGAGTTCGAGG 3280619 Query 53781 ---TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGG 53837 | |||||| |||| || | | || | | |||| ||| |||| | |||| Sbjct 3280618 CTCTGTACGAGAAGTAT--GA-GAAGGCTGGTAAGGGTCGC------AAGACCATGAAGG 3280568 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 | | || | ||| |||| |||||| || ||| ||||| || | || | |||| Sbjct 3280567 CCCAGAAGCTCTGGTATGCCATCCTCGAGGCTCAGACTGAGACTGGCAACCCCTTCATGC 3280508 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||||| |||| |||||||||||||||||| Sbjct 3280507 TCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAAC 3280467 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || || ||||| | ||| || |||||||||||||| |||||| |||| || | || Sbjct 3279635 GCCGACCGAGGTGCCTTCATTGATCAGTCCCAGTCTCTCAACATCCACATGAAGGACCCC 3279576 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | | ||||||||| ||| |||||| || || ||||| || Sbjct 3279575 ACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAGCTCGGTCTGAAGACAGGC 3279516 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||| ||||| || Sbjct 3279515 ATGTACTACCTGCGAAC 3279499 >seq12 Length=8749402 Score = 152 bits (168), Expect = 6e-32 Identities = 219/307 (71%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350 |||| | || ||||| || | ||||| | || ||||||||| ||||| || || | Sbjct 2274787 ACGGAGAGAGTCGAGTAAAGGTATAACGGGGACTAGCAGCATCCGAACCACCGGCGAGTC 2274846 Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410 | | |||||| | |||||| ||||||| | ||| | |||||| | ||||||||||| | Sbjct 2274847 GAGAACCGAAGTTTCCACTTGGCTCCAGGCAGTTGATGTTGTTTGATCCCACAAAGTTCT 2274906 Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470 | |||| | | || || |||||| ||||||||| ||||| || || ||||| | Sbjct 2274907 GGGCCAGGCCAATGATGGTCTGTTGGAGAGACGCCTCACCGTGGTGGTATGCTGTCTGTT 2274966 Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAG 117528 | | ||| || || |||| | | |||||| | || |||| |||||| |||||| Sbjct 2274967 CAGACACATAACCAGCCAATTCCACGACCTTCTTATCCTTGAC--CAGGTTTCTCTTGAA 2275024 Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGA 117588 ||| || || | |||||||||||||| ||||| | |||||| || ||||||||| Sbjct 2275025 GCAAGCGTAGAGCACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGA 2275084 Query 117589 ACGCTTG 117595 ||| || Sbjct 2275085 TCGCATG 2275091 Score = 107 bits (118), Expect = 2e-18 Identities = 200/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || || ||| | || |||| || || |||||| ||||| || || || | || || Sbjct 2274798 CGAGTAAAGGTATAACGGGGACTAGCAGCATCCGAACCACCGGCGAGTCGAGAACCGAAG 2274857 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||||| ||| ||||| |||||| | ||||| || ||||| |||| Sbjct 2274858 TTTCCACTTGGCTCCAGGCAGTTGATGTTGTTTGATCCCACAAAGTTCTGGGCCAGGCCA 2274917 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || || || ||| ||| ||||||||||| || || ||||| || | | || Sbjct 2274918 ATGATGGTCTGTTGGAGAGACGCCTCACCGTGGTGGTATGCTGTCTGTTCAGACACATAA 2274977 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | | | |||||| | ||| | |||||| |||||| || ||||| | | Sbjct 2274978 CCAGCCAATTCCACGACCTTCTTATCCTTGACCAGGTTTCTCTTGAAGCAAGCGTAGAGC 2275037 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||||||||| || || || || |||| || ||| ||||| ||| || Sbjct 2275038 ACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGCATG 2275091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215883716600