Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq13 143 6e-29 seq12 131 4e-25 seq17 129 1e-24 seq11 96.9 8e-15 >seq13 Length=4347623 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| ||||| || || || |||| ||||| ||| | ||||| || || Sbjct 2712006 AGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCC 2711947 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||||||||||||||| |||||||| || ||||| |||||||| || Sbjct 2711946 TCGAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCC 2711887 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| ||||| || | |||||| || | ||||| ||| Sbjct 2711886 TGAATCTTCGACTTCACGTTATCGATCGTGTCGGATGATTCCACCTCAAGGGTGATGGTC 2711827 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| || | ||| | |||||| Sbjct 2711826 TTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2711795 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||||||||| || || |||| ||||||||||| | || | ||||| Sbjct 2711500 AGGACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGGCCATCC 2711441 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || || || || || || || |||||||| Sbjct 2711440 TCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC 2711381 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| |||||||| || |||| || || || | ||||| ||| Sbjct 2711380 TGAATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTC 2711321 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 2711320 TTGCCCGTCA 2711311 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || ||||| || || | ||||| || | | || | ||||| Sbjct 2712234 AGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCATCC 2712175 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||||||||| || |||||||| || ||||| |||||||| Sbjct 2712174 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 2712115 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || || || || || || || | ||||| ||| Sbjct 2712114 TGAATCTTGGACTTCACATTATCAATAGTATCGCTGGACTCGACCTCCAGAGTGATTGTC 2712055 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || || | ||| || Sbjct 2712054 TTTCCAGTGAGAGTCTT 2712038 >seq12 Length=8749402 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||| || || |||| ||||| ||| || || | ||||| Sbjct 4927419 AGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 4927360 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| ||||| || |||||||| || || || |||||||| Sbjct 4927359 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 4927300 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||| ||| Sbjct 4927299 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 4927240 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | || || | ||| | ||||| || Sbjct 4927239 TTCCCCGTAAGGGTCTTGACGAAGATCTGCATCTT 4927205 >seq17 Length=2611553 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | ||||| ||||| || |||||||| ||||||||||| Sbjct 1259123 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 1259182 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| || || || || ||||| || |||||||| |||||||| ||| ||| || Sbjct 1259183 AGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 1259242 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 1259243 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1259301 >seq11 Length=4934405 Score = 96.9 bits (106), Expect = 8e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 ||||||||| |||| || | | || ||||||| |||||||| |||| ||| Sbjct 3280471 TTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCA 3280530 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | ||||| |||| ||| || ||| || | || || |||| ||| | | |||| Sbjct 3280531 GTCTGAGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTA 3280590 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || || |||| ||||| |||||||| |||| || || | |||||| ||| |||| Sbjct 3280591 CCAGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGG 3280650 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 |||||| || || || || | |||| |||| || || | | || || | ||||||| Sbjct 3280651 CCGGGACACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATG 3280710 Query 193740 AAGAGGTC 193747 ||||| || Sbjct 3280711 AAGAGATC 3280718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530940251798