Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13 167 6e-36 seq17 136 1e-26 seq12 132 1e-25 seq11 86.0 2e-11 >seq13 Length=4347623 Score = 167 bits (184), Expect = 6e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| ||||| || |||||||| ||||||||| || ||| Sbjct 2711798 CAAATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAATCATCCGAC 2711857 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||| || |||||||| ||||| ||||| || Sbjct 2711858 ACGATCGATAACGTGAAGTCGAAGATTCAGGATAAGGAAGGAATTCCTCCTGACCAACAG 2711917 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||| || || || ||||| || || | ||||| ||| || ||| || Sbjct 2711918 CGACTTATCTTCGCTGGCAAGCAACTCGAGGACGGCCGAACTCTCAGCGACTACAACATC 2711977 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || ||||| || ||| Sbjct 2711978 CAGAAGGAGTCTACTCTGCACCTGGTT 2712004 Score = 136 bits (150), Expect = 1e-26 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||||||||| || ||| || |||||||| || ||||| Sbjct 2711313 ACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACCATCGACAATGTCAAGTCG 2711372 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || |||||||| || ||||| || || || |||||||| || Sbjct 2711373 AAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATTTTCGCCGGCAAG 2711432 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || ||| ||||||| || |||| || || || || || ||| Sbjct 2711433 CAGCTTGAGGATGGCCGCACCCTTTCCGATTACAATATCCAGAAGGAGTCCACTCTCCAT 2711492 Query 178125 CTTGT 178129 || || Sbjct 2711493 CTCGT 2711497 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || ||||||||||||||||| || ||||| |||| Sbjct 2711577 TCGTCAAGACCCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCG 2711636 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| |||||| |||||||| || || || ||||| || ||||| || || | Sbjct 2711637 ACAACGTCAAGTCAAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAGCAGCGCCTGA 2711696 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || ||||| || ||||| | || || ||||| || ||| | || || | Sbjct 2711697 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATTCAGAAGG 2711756 Query 178111 AATCAACACTGCATCTTGTT 178130 | || || || || || ||| Sbjct 2711757 AGTCCACCCTCCACCTCGTT 2711776 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| ||||| || ||||| || ||||| || | || Sbjct 2712026 CAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACTCTGGAGGTCGAGTCCAGCGAT 2712085 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || |||||||||||||| || || ||||| || |||||||| Sbjct 2712086 ACTATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAG 2712145 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || ||||| || ||||| | || || | || || ||| | Sbjct 2712146 CGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTCTCTGACTACAACATT 2712205 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || ||||| ||||| Sbjct 2712206 CAGAAGGAATCGACCCTGCACCTTGT 2712231 >seq17 Length=2611553 Score = 136 bits (150), Expect = 1e-26 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || ||| |||||||| Sbjct 1259302 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 1259243 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || ||||| ||||| |||||||| || || || || ||||| ||||| ||||| Sbjct 1259242 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACT 1259183 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || ||||| || ||||| | ||||| |||| || ||| |||| || Sbjct 1259182 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 1259123 >seq12 Length=8749402 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 4927211 CAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACCCTTGAGGTGGAGTCTTCCGAC 4927270 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 4927271 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 4927330 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 4927331 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 4927390 Query 178104 CAAAAAGA 178111 || || || Sbjct 4927391 CAGAAGGA 4927398 >seq11 Length=4934405 Score = 86.0 bits (94), Expect = 2e-11 Identities = 182/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATT 214182 |||| ||| ||||||||||| |||||| | ||| ||||| ||||| || | Sbjct 3280462 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTG 3280521 Query 214183 CCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTT 214242 || ||| ||||| | || ||| || |||||| | |||||||||| | | || Sbjct 3280522 CCAGTCTCAGTCTGAGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTC-TT 3280580 Query 214243 TTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGAC 214301 | | ||| || | || || ||||| || || |||| ||| || ||| ||||||| Sbjct 3280581 GCGACCCTTACCAGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCA 3280640 Query 214302 ATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGAC 214361 || | || |||||| ||||||||| || | ||| |||| | || || | | ||| Sbjct 3280641 GTCGGCGAGGCCGGGACACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGAC 3280700 Query 214362 TCTTTTCATGAAAAGGTCGGAAGTCCAGA 214390 | |||||||| || |||| | |||||| Sbjct 3280701 ACGCTTCATGAAGAGATCGGGAATCCAGA 3280729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730937812298