Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20solani_20[genbank_20GCA_5F002215905.1_202017-07-07] 17 sequences; 45,813,297 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq12 143 2e-29 seq13 138 1e-27 seq17 116 3e-21 seq1 91.5 1e-13 >seq12 Length=8749402 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || |||||||||||||| ||||| |||||| Sbjct 4927434 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 4927375 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| || || || || ||||| ||||| | ||| Sbjct 4927374 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 4927315 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 4927314 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCAC 4927256 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || ||||| ||||| |||||||| || Sbjct 4927255 CTCAAGGGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATCTT 4927205 >seq13 Length=4347623 Score = 138 bits (152), Expect = 1e-27 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || || || ||| ||||||||||||||| ||||||| | Sbjct 2711793 CCACCGCGAAGGCGGAGAACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 2711734 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || ||||||||||| || || | ||| Sbjct 2711733 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGA 2711674 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| ||| ||| ||| | | | |||||| |||||||| Sbjct 2711673 ATGCCCTCCTTGTCCTGGATCTTTGACTT-GACGTTGTCGATCGTGTCGGAAGACTCCAC 2711615 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || ||||| ||||| |||| Sbjct 2711614 CTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGACGA 2711577 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||| || ||||| || |||||||||||||| ||||| ||| Sbjct 2712249 CCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAG 2712190 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || || || || || ||||| ||||| | ||| Sbjct 2712189 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGG 2712130 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || | ||||| | | | | ||| ||||| ||||| | Sbjct 2712129 ATACCCTCCTTGTCC-TGAATCTTGGACTTCACATTATCA-ATAGTATCGCTGGACTCGA 2712072 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || ||||| || || |||||||| Sbjct 2712071 CCTCCAGAGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 2712023 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| || ||||||||| ||||| |||||| | Sbjct 2712021 CCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTG 2711962 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||| |||||||| ||||| || || ||||||||||| | ||| Sbjct 2711961 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 2711902 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||||| ||| ||| | || | |||| ||| | | |||||| || |||| Sbjct 2711901 ATTCCTTCCTTATCC-TGAATCTTCGACTTC-ACGTTATCGATCGTGTCGGATGATTCCA 2711844 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| || ||||| Sbjct 2711843 CCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2711795 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| ||||||||| || || || ||||| Sbjct 2711516 GCCACCACGGAGACGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAATCGGA 2711457 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||||||||| ||||||||||| || || | || Sbjct 2711456 AAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGG 2711397 Query 41755 AACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 2711396 GATGCCCTCCTTGTCC 2711381 >seq17 Length=2611553 Score = 116 bits (128), Expect = 3e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||| || || | || || ||||||||||| ||||| | Sbjct 1259121 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 1259180 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| || |||| ||||| || |||||||||| ||| || ||| || | Sbjct 1259181 TCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACATTG 1259239 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||| | || || || || |||||||| ||||| ||| Sbjct 1259240 TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 1259299 Query 41852 AAA 41854 ||| Sbjct 1259300 AAA 1259302 >seq1 Length=6466812 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || || || |||||| ||||||| |||||| |||||| || ||| Sbjct 3850704 CGCATCGCTCCCCGATCTGGTCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGCGTC 3850645 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 ||||||||||||||| | || | |||| || | ||||||||||||||||| Sbjct 3850644 ATCGACGCCGACTACAGAGGCCAGGTCAAGGTCCTTCTCTTCAACCACGGCGA 3850592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303901760400