Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq54 131 2e-25
>seq54
Length=1261221
Score = 131 bits (144), Expect = 2e-25
Identities = 357/539 (66%), Gaps = 22/539 (4%)
Strand=Plus/Plus
Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058
||| || ||||| || || |||| |||||||| || || ||||| | ||| || ||
Sbjct 1145488 GATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGAT 1145547
Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118
| || || | ||| ||||| ||||||||||||| || || || | | || |
Sbjct 1145548 GGAAGCAAAGGCACCACTGAAGAAGATACCCTCGACGGCAGCGAAGGCAACGAGACGCTG 1145607
Query 17119 GGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTA 17177
|| | | | ||| |||| | |||||| | |||| ||||| || |||| |
Sbjct 1145608 AGCAAAGGAAGAGTCCTTGTCCTGGATCCATCTGATAGCCCAGTCGGCCTTCTTGCGG-A 1145666
Query 17178 TGCAATCCATCGTTTCTATGGCCTTAAATA-AT---TTCTCTTTTTCCTGTAGG-TCGAT 17232
||||| || || || ||||| || || | || ||| || | ||| || |
Sbjct 1145667 TGCAAGGGATGGTCTCAATGGCGTTGAAGAGATAGGTTCGCTGA-----GAAGGCTCCTT 1145721
Query 17233 TATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTG 17292
|| || || || ||||| ||| ||| | |||||||| ||||||||||| |||||
Sbjct 1145722 GATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTG 1145781
Query 17293 AAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAG 17352
|| ||||| |||||||| || || | || ||||| || || |||||| || | ||
Sbjct 1145782 GAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCTGAATCGCTCAACAAG 1145841
Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATA 17412
||| ||||| ||||||||||| |||||||| || || | || || ||||| |
Sbjct 1145842 ATTCTCGTTGACGATGCCGTCAGAGGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGAA 1145901
Query 17413 TTTTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCAC 17466
| ||||| | || || ||| |||||| | | ||| ||||| | ||| |
Sbjct 1145902 CTGCTCGTCAGAGGTCAG---GCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAAT 1145958
Query 17467 TTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGT 17525
|| |||| ||||| ||| ||| | ||||| || ||||| | ||| || | |||||
Sbjct 1145959 CTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATCT-ATTGT 1146016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517544933660040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |