Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq54 131 2e-25 >seq54 Length=1261221 Score = 131 bits (144), Expect = 2e-25 Identities = 357/539 (66%), Gaps = 22/539 (4%) Strand=Plus/Plus Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058 ||| || ||||| || || |||| |||||||| || || ||||| | ||| || || Sbjct 1145488 GATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGAT 1145547 Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 | || || | ||| ||||| ||||||||||||| || || || | | || | Sbjct 1145548 GGAAGCAAAGGCACCACTGAAGAAGATACCCTCGACGGCAGCGAAGGCAACGAGACGCTG 1145607 Query 17119 GGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTA 17177 || | | | ||| |||| | |||||| | |||| ||||| || |||| | Sbjct 1145608 AGCAAAGGAAGAGTCCTTGTCCTGGATCCATCTGATAGCCCAGTCGGCCTTCTTGCGG-A 1145666 Query 17178 TGCAATCCATCGTTTCTATGGCCTTAAATA-AT---TTCTCTTTTTCCTGTAGG-TCGAT 17232 ||||| || || || ||||| || || | || ||| || | ||| || | Sbjct 1145667 TGCAAGGGATGGTCTCAATGGCGTTGAAGAGATAGGTTCGCTGA-----GAAGGCTCCTT 1145721 Query 17233 TATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTG 17292 || || || || ||||| ||| ||| | |||||||| ||||||||||| ||||| Sbjct 1145722 GATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTG 1145781 Query 17293 AAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAG 17352 || ||||| |||||||| || || | || ||||| || || |||||| || | || Sbjct 1145782 GAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCTGAATCGCTCAACAAG 1145841 Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATA 17412 ||| ||||| ||||||||||| |||||||| || || | || || ||||| | Sbjct 1145842 ATTCTCGTTGACGATGCCGTCAGAGGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGAA 1145901 Query 17413 TTTTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCAC 17466 | ||||| | || || ||| |||||| | | ||| ||||| | ||| | Sbjct 1145902 CTGCTCGTCAGAGGTCAG---GCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAAT 1145958 Query 17467 TTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGT 17525 || |||| ||||| ||| ||| | ||||| || ||||| | ||| || | ||||| Sbjct 1145959 CTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATCT-ATTGT 1146016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544933660040