Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq54 86.0 6e-12 >seq54 Length=1261221 Score = 86.0 bits (94), Expect = 6e-12 Identities = 367/573 (64%), Gaps = 14/573 (2%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||||| || || || || || | ||| || |||||||| || || Sbjct 1145450 AGGCAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTC 1145509 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| || || ||||| | |||||| || | |||||| | || ||| Sbjct 1145510 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAG 1145569 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || |||||||| || | || || || | | || | || | | || || || | Sbjct 1145570 AAGATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGAAGAGTCCTTGTCC 1145629 Query 16379 CGAATCCATTTCTG-TA-CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 | |||||| ||| || |||| ||||| || | || ||| || || || |||| Sbjct 1145630 TGGATCCAT--CTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGG 1145687 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATA---TCGATTATATACGTATCAATCAGTAAAC 16493 | || || | | || |||| | || | || || || ||||| || | Sbjct 1145688 CGTTGAAGAGATAGG---TTCGCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGG 1145744 Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553 ||| | || ||||| |||||||| || ||||| || || |||||||||||||||| Sbjct 1145745 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCT 1145804 Query 16554 CCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | | || || || || || ||||| || | || ||||| || ||||| |||||| Sbjct 1145805 CGGGGATCTGAACCTCGCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAG 1145864 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA---GAA 16670 || || || || || | ||||| ||||| | | |||||||| || | | Sbjct 1145865 AGGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGT 1145924 Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 | | ||| || | | ||| ||||| | ||| | || || | ||||| || ||| Sbjct 1145925 TGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCT 1145984 Query 16731 CTGCCTTTTTATACATTTTCCAAATATCATTGT 16763 | ||||| || ||||| | ||| || | ||||| Sbjct 1145985 CGGCCTTCTTGTACATCTGCCAGATCT-ATTGT 1146016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413741553960