Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq54 86.0 6e-12
>seq54
Length=1261221
Score = 86.0 bits (94), Expect = 6e-12
Identities = 367/573 (64%), Gaps = 14/573 (2%)
Strand=Plus/Plus
Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258
|| || || |||||| || || || || || | ||| || |||||||| || ||
Sbjct 1145450 AGGCAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTC 1145509
Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318
| || ||||| || || ||||| | |||||| || | |||||| | || |||
Sbjct 1145510 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAG 1145569
Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378
|| |||||||| || | || || || | | || | || | | || || || |
Sbjct 1145570 AAGATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGAAGAGTCCTTGTCC 1145629
Query 16379 CGAATCCATTTCTG-TA-CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436
| |||||| ||| || |||| ||||| || | || ||| || || || ||||
Sbjct 1145630 TGGATCCAT--CTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGG 1145687
Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATA---TCGATTATATACGTATCAATCAGTAAAC 16493
| || || | | || |||| | || | || || || ||||| || |
Sbjct 1145688 CGTTGAAGAGATAGG---TTCGCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGG 1145744
Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553
||| | || ||||| |||||||| || ||||| || || ||||||||||||||||
Sbjct 1145745 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCT 1145804
Query 16554 CCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613
| | || || || || || ||||| || | || ||||| || ||||| ||||||
Sbjct 1145805 CGGGGATCTGAACCTCGCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAG 1145864
Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA---GAA 16670
|| || || || || | ||||| ||||| | | |||||||| || | |
Sbjct 1145865 AGGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGT 1145924
Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730
| | ||| || | | ||| ||||| | ||| | || || | ||||| || |||
Sbjct 1145925 TGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCT 1145984
Query 16731 CTGCCTTTTTATACATTTTCCAAATATCATTGT 16763
| ||||| || ||||| | ||| || | |||||
Sbjct 1145985 CGGCCTTCTTGTACATCTGCCAGATCT-ATTGT 1146016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511413741553960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |