Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq54 329 3e-85 seq41 131 2e-25 seq4 129 6e-25 seq32 123 3e-23 >seq54 Length=1261221 Score = 329 bits (364), Expect = 3e-85 Identities = 566/809 (70%), Gaps = 17/809 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||||| | || ||| Sbjct 1146009 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTG 1145950 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||| | |||||| |||||| Sbjct 1145949 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACCTCTGACGAGCAGTTCTTCATCTC 1145891 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| ||||||||| ||||||||||||||||||||||| || ||||| Sbjct 1145890 TCACATCCTTGCCTTCTTCGCCGCCTCTGACGGCATCGTCAACGAGAATCTTGTTGAGCG 1145831 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 1145830 ATTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 1145771 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || ||||| ||||| ||| | | || ||| Sbjct 1145770 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGC-CTT 1145712 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || ||| || | | || |||||||| ||||| || || ||| || |||||| Sbjct 1145711 CTCAGC-GAACCTA--TCTCTTCAACGCCATTGAGACCATCCCTTGCATCCGCAAGAAGG 1145655 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| | | |||||| | || || | |||| | |||| || || | Sbjct 1145654 CCGACTGGGCTATCAGATGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGTCTCGTTG 1145595 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 ||||||| ||||||||||| ||||||| || || || |||| || ||||||| Sbjct 1145594 CCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCTTCCATCTTCTGGCTCA 1145535 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || ||||||||||| ||||| ||| ||||||||||||||| | || |||| Sbjct 1145534 AGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 1145475 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || |||||||||||| | || | || | | || | ||| | Sbjct 1145474 GTCTTCACACCGACTTTGCCTGCCTCCTCCACTCCCACCTCAAGGGCCGTGCCAGCAAGC 1145415 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | | || ||| ||| |||| || || ||| |||| |||||| ||||| || || | Sbjct 1145414 AGATCATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTGACTGAGG 1145355 Query 117288 CGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTT 117345 | || || |||| || || || | || || || | ||| ||| ||||||||||| Sbjct 1145354 CTCT-CCCCTGCGCCCTCCTCGGCATGAA-CGCCAACCTCATGAAGCAGTACATCGAGTT 1145297 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 |||||||||| | || || ||| |||| | || ||| |||||| | ||||||| Sbjct 1145296 CGTCGCCGACCGTCTCCTCGTCGCCCTGGGCAACGAGAAGGTCTACAAGTCTGCCAACCC 1145237 Query 117406 GCTGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||| ||| | ||||||| ||| Sbjct 1145236 CTTCGACTTCATGGAGAACATCTCCCTGG 1145208 >seq41 Length=1307349 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || |||||| | || || || | Sbjct 954556 AAGATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAGGTGGAGTCT 954497 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| | || Sbjct 954496 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGA 954438 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||||| |||| || || || ||||| || || | |||||||| | |||||| Sbjct 954437 CCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 954378 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| ||| || || || || | ||| || | || || Sbjct 954377 CAACATCCAGAAGGAGAGCACTCTCCACCTGGTCCTCCGCCTGCGTGGTGG 954327 >seq4 Length=1115785 Score = 129 bits (142), Expect = 6e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 972232 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 972173 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||| ||||| ||||| Sbjct 972172 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACTG 972113 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | || || ||| ||||||||||||||||||| Sbjct 972112 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 972053 Query 40879 G 40879 | Sbjct 972052 G 972052 >seq32 Length=3227256 Score = 123 bits (136), Expect = 3e-23 Identities = 154/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || |||||||| | || ||||| ||| | Sbjct 1807627 ATGCAGATCTTTGTCAAGACTCTCACAGGAAAGACCATCACTCTGGAGGTCGAGTCCAGC 1807568 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || |||| ||||| ||||| |||||| || ||||| Sbjct 1807567 GATACCATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCG-ACCAG 1807509 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| || || || |||||||| |||| ||||||||| ||||||||| Sbjct 1807508 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTCTCTGACTACAAC 1807449 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||||||| | || ||||| || ||| Sbjct 1807448 ATTCAGAAGGAATCGACCCTGCACCTTGTG 1807419 Score = 120 bits (132), Expect = 3e-22 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAA-AACCATCACCGT-CGACGTCGAAGCCA 40747 |||||||| ||||| || || ||||| || || |||||||||| | ||| || ||| | Sbjct 1807857 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGAACCATCACCCTTCGAGGTGGAATCGT 1807798 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | |||| | ||| || |||| || || || || || || | ||| Sbjct 1807797 CCGACACAATCGATAACG-TGAAGTCGAAGATTCAGGATAAGGAAGGAATTCCTCCTGAC 1807739 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || ||||| |||| ||| ||||| || || || |||| || || |||| ||||||| Sbjct 1807738 CAACAGCGACTTATCTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTCAGCGACTAC 1807679 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||||| | || ||||| || || Sbjct 1807678 AACATCCAGAAGGAGTCTACTCTGCACCTGGT 1807647 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 |||||||| ||||||||| |||| || || || | || | | | | | ||||| Sbjct 1808271 ACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACCATCGACAATGTCAAGTCG 1808212 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||||||||| | || ||||| || || || | ||| ||||| Sbjct 1808211 AAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATTTTCGCCGGCAAG 1808152 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | |||||||| ||| |||||||||||||||||| |||| || ||| Sbjct 1808151 CAGCTTGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCCACCCTCCAT 1808092 Query 40894 CTAGT 40898 || || Sbjct 1808091 CTCGT 1808087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218536655280