Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq54 329 3e-85
seq41 131 2e-25
seq4 129 6e-25
seq32 123 3e-23
>seq54
Length=1261221
Score = 329 bits (364), Expect = 3e-85
Identities = 566/809 (70%), Gaps = 17/809 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | ||||||| | || |||
Sbjct 1146009 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTG 1145950
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | ||| ||| | |||||| ||||||
Sbjct 1145949 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACCTCTGACGAGCAGTTCTTCATCTC 1145891
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || ||||| ||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1145890 TCACATCCTTGCCTTCTTCGCCGCCTCTGACGGCATCGTCAACGAGAATCTTGTTGAGCG 1145831
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| ||||| ||| | ||||||| || |||||||||||||| |||||| ||
Sbjct 1145830 ATTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 1145771
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927
||||||| | ||||| || | || || ||||| ||||| ||| | | || |||
Sbjct 1145770 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGC-CTT 1145712
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| || ||| || | | || |||||||| ||||| || || ||| || ||||||
Sbjct 1145711 CTCAGC-GAACCTA--TCTCTTCAACGCCATTGAGACCATCCCTTGCATCCGCAAGAAGG 1145655
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
|||| ||||| | | |||||| | || || | |||| | |||| || || |
Sbjct 1145654 CCGACTGGGCTATCAGATGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGTCTCGTTG 1145595
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
||||||| ||||||||||| ||||||| || || || |||| || |||||||
Sbjct 1145594 CCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCTTCCATCTTCTGGCTCA 1145535
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|||| || || ||||||||||| ||||| ||| ||||||||||||||| | || ||||
Sbjct 1145534 AGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 1145475
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
|||| || |||||||||||| | || | || | | || | ||| |
Sbjct 1145474 GTCTTCACACCGACTTTGCCTGCCTCCTCCACTCCCACCTCAAGGGCCGTGCCAGCAAGC 1145415
Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287
| | || ||| ||| |||| || || ||| |||| |||||| ||||| || || |
Sbjct 1145414 AGATCATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTGACTGAGG 1145355
Query 117288 CGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTT 117345
| || || |||| || || || | || || || | ||| ||| |||||||||||
Sbjct 1145354 CTCT-CCCCTGCGCCCTCCTCGGCATGAA-CGCCAACCTCATGAAGCAGTACATCGAGTT 1145297
Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405
|||||||||| | || || ||| |||| | || ||| |||||| | |||||||
Sbjct 1145296 CGTCGCCGACCGTCTCCTCGTCGCCCTGGGCAACGAGAAGGTCTACAAGTCTGCCAACCC 1145237
Query 117406 GCTGGACTTTATGAACCTCATCTCCTTGG 117434
| ||||| ||| | ||||||| |||
Sbjct 1145236 CTTCGACTTCATGGAGAACATCTCCCTGG 1145208
>seq41
Length=1307349
Score = 131 bits (144), Expect = 2e-25
Identities = 169/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || || ||||| || || |||||| | || || || |
Sbjct 954556 AAGATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAGGTGGAGTCT 954497
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | |||| ||||| || || | ||||| |||||||| ||| | ||
Sbjct 954496 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGA 954438
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| ||||| |||| || || || ||||| || || | |||||||| | ||||||
Sbjct 954437 CCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 954378
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||| ||| || || || || | ||| || | || ||
Sbjct 954377 CAACATCCAGAAGGAGAGCACTCTCCACCTGGTCCTCCGCCTGCGTGGTGG 954327
>seq4
Length=1115785
Score = 129 bits (142), Expect = 6e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | |
Sbjct 972232 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 972173
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| |||| ||||| |||||
Sbjct 972172 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACTG 972113
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | || || ||| |||||||||||||||||||
Sbjct 972112 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 972053
Query 40879 G 40879
|
Sbjct 972052 G 972052
>seq32
Length=3227256
Score = 123 bits (136), Expect = 3e-23
Identities = 154/210 (73%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || ||||| || || |||||||| | || ||||| ||| |
Sbjct 1807627 ATGCAGATCTTTGTCAAGACTCTCACAGGAAAGACCATCACTCTGGAGGTCGAGTCCAGC 1807568
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | ||| || |||| ||||| ||||| |||||| || |||||
Sbjct 1807567 GATACCATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCG-ACCAG 1807509
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||||| |||| || || || |||||||| |||| ||||||||| |||||||||
Sbjct 1807508 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTCTCTGACTACAAC 1807449
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|| |||||||| | || ||||| || |||
Sbjct 1807448 ATTCAGAAGGAATCGACCCTGCACCTTGTG 1807419
Score = 120 bits (132), Expect = 3e-22
Identities = 157/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAA-AACCATCACCGT-CGACGTCGAAGCCA 40747
|||||||| ||||| || || ||||| || || |||||||||| | ||| || ||| |
Sbjct 1807857 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGAACCATCACCCTTCGAGGTGGAATCGT 1807798
Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | |||| | ||| || |||| || || || || || || | |||
Sbjct 1807797 CCGACACAATCGATAACG-TGAAGTCGAAGATTCAGGATAAGGAAGGAATTCCTCCTGAC 1807739
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|| || ||||| |||| ||| ||||| || || || |||| || || |||| |||||||
Sbjct 1807738 CAACAGCGACTTATCTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTCAGCGACTAC 1807679
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||||| | || ||||| || ||
Sbjct 1807678 AACATCCAGAAGGAGTCTACTCTGCACCTGGT 1807647
Score = 118 bits (130), Expect = 1e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|||||||| ||||||||| |||| || || || | || | | | | | |||||
Sbjct 1808271 ACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACCATCGACAATGTCAAGTCG 1808212
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| |||| ||||| ||||||||||| | || ||||| || || || | ||| |||||
Sbjct 1808211 AAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATTTTCGCCGGCAAG 1808152
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || || | |||||||| ||| |||||||||||||||||| |||| || |||
Sbjct 1808151 CAGCTTGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCCACCCTCCAT 1808092
Query 40894 CTAGT 40898
|| ||
Sbjct 1808091 CTCGT 1808087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218536655280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |