Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq41 122 1e-22
seq32 111 2e-19
seq4 93.3 5e-14
>seq41
Length=1307349
Score = 122 bits (134), Expect = 1e-22
Identities = 149/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
||||||||||| || || ||||| || ||| || || | || || ||||||||||||
Sbjct 954357 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 954416
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106
|| || || |||||||||||||||| || | || |||||||||| ||| || |||
Sbjct 954417 GCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 954476
Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165
| ||| | | | |||||| || ||||| || | ||||| || || ||||| || ||
Sbjct 954477 A-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGT 954535
Query 43166 CTTTACAAAGATTTGCAtttt 43186
||| || ||||| ||||| ||
Sbjct 954536 CTTGACGAAGATCTGCATCTT 954556
>seq32
Length=3227256
Score = 111 bits (122), Expect = 2e-19
Identities = 142/192 (74%), Gaps = 3/192 (2%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| ||||| ||||| |||| || || || |||| || |||||||||||||| ||
Sbjct 1807438 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAG 1807497
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| |||||||||||||||| || | | |||||||||| ||| | || | || | |
Sbjct 1807498 ATAAGTCGCTGCTGGTCGG-GGGGATACCCTCCTTGTCC-TGAATCTTGGACTTCACATT 1807555
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | || ||||| || || || || | |||||||| || || || || ||||| ||
Sbjct 1807556 ATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGAC 1807615
Query 43172 AAAGATTTGCAt 43183
|||||| |||||
Sbjct 1807616 AAAGATCTGCAT 1807627
>seq4
Length=1115785
Score = 93.3 bits (102), Expect = 5e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||||| || | || || |||||||| |||||||| |
Sbjct 972052 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 972111
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| ||||||||||| || | || | || |||||||||| ||| || |||| |
Sbjct 972112 TCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 972171
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||| || || || |||| |||||||| |||||||| || ||||| || |
Sbjct 972172 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 972231
Query 43174 A 43174
|
Sbjct 972232 A 972232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571816863784840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |