Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq37 123 5e-23 >seq37 Length=4018383 Score = 123 bits (136), Expect = 5e-23 Identities = 383/582 (66%), Gaps = 23/582 (4%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| |||| ||| | | || || | ||| | | ||||| ||||| || Sbjct 713983 CTAGACTCCGCCATTGTCTATGACCGTGACTTCCAATACCAATACTTTGGCTTCAAGACT 714042 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 || ||| ||| || |||||||| |||||||||||||| || || || ||||||||| Sbjct 714043 CTTGAGCGATCCTACCTCCTCAAGATTGATGGCAAGATTGTTGAGCGCCCCCAGCACATG 714102 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATG---ACATAGAGAGCGTGCTCGAGACG 248958 | ||||| || |||||||| || | || || |||| ||| | || |||||||| Sbjct 714103 ATCATGCGTGTTGCTGTCGGCAT---CTGGGGTGACAACATTGAGCGTGTCCTCGAGACT 714159 Query 248959 TACACCGGAATG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGG 249017 |||| | ||| | | | | | | || |||||| | || || |||||||| || || Sbjct 714160 TACAACCTCATGTCGAGCAAG-TTCTTCACCCATGCCTCCCCCACCCTCTTCAATGCGGG 714218 Query 249018 TACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGA 249077 ||| | | |||||| ||| ||||| ||| | | |||| | || ||| | | || Sbjct 714219 TACTCCCCAGCCTCAGCTCTCCTCATGCTTCCTTGTCGACATGAAGGAGGACAGTATTGA 714278 Query 249078 CGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAAT 249134 || |||||||| || || | |||| || | |||||| || | || || || || Sbjct 714279 GGGTATTTATGATACTCTCA---AGACCTGTGCCATGATTTCCAAGATGGCTGGTGGTAT 714335 Query 249135 CGGTCTCTCCGT-CTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGG 249193 ||||| ||| | || | ||||| || | || || |||||| ||||| || || Sbjct 714336 TGGTCTGAACGTGCACCGA-ATCCGTGCCACTGGCTCCTACATCGCCGGTACCAACGGTA 714394 Query 249194 TCAGTGATGGTATCGTACCCC--TCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAA 249251 | | ||| | |||||| | ||||| ||| | ||| ||| | | | || | Sbjct 714395 CCTCCAACGGTGT--TACCCCTATGCTTCGTGTCTTCAACAACACTGCCCGATACGTCGA 714452 Query 249252 CCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGA 249308 |||| || | ||| || | || ||||| || | || |||||||| || Sbjct 714453 TCAGGGTGGCAACAAGCGACCTGGTGCTTTTGCCATCTACCTTGAGCCCTGGCACGCAGA 714512 Query 249309 TATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 | | || |||||||| ||| || |||||| ||||||| || Sbjct 714513 TGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGA 714554 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||||||||| || || |||||||| || |||||||| || ||||| || | | | Sbjct 932780 TCTACGGTCCTCCAGGCACCGGCAAGACATCCACCATCCTCGCCCTGGCGCGCCGCATCT 932721 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 |||| | |||||| | || ||||||||||| ||||| || || || || || Sbjct 932720 ATGGCGCTGCAAACATGCGCCAGATGGTGCTCGAGCTTAACGCCTCGGATGATCGTGGTA 932661 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 | || || || || || |||||||||| || Sbjct 932660 TCGATGTGGTGCGTGAGCAGATCAAGACCTT 932630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764982963904