Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq41 123 2e-23
seq32 104 2e-17
>seq41
Length=1307349
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || |||||||||||||| |||||||||||| |||| ||| | || ||
Sbjct 954345 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 954404
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| |||||||| || | ||||||||||||
Sbjct 954405 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 954464
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| || |||||
Sbjct 954465 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTC 954524
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| || ||||| || ||||| ||||| ||||||
Sbjct 954525 CCCGTAAGGGTCTTGACGAAGATCTGCATCTTGCCT 954560
>seq32
Length=3227256
Score = 104 bits (114), Expect = 2e-17
Identities = 146/204 (72%), Gaps = 1/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
|||||| || |||||||||||||||||||| || |||| |||| ||||| ||
Sbjct 1807425 GTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTG 1807484
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || || | ||||| |||||||| || | ||||||||||||| ||| ||
Sbjct 1807485 CTTACCAGCAAAGATAAGTCGCTGCTGGTCGGG-GGGATACCCTCCTTGTCCTGAATCTT 1807543
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | || | ||| ||||||| || || ||||| || ||
Sbjct 1807544 GGACTTCACATTATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGT 1807603
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| |||||||| |||||
Sbjct 1807604 GAGAGTCTTGACAAAGATCTGCAT 1807627
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| || ||||||||| |||||||||||| | || || |||| ||
Sbjct 1807647 ACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCG 1807706
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
||||| || |||||||| || | ||||||||||| ||||| | || ||||| ||| |
Sbjct 1807707 AGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCCTGA 1807766
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTC-CACGGTAATCG-TCT 45305
|| || ||| || | | |||| |||||||| | ||| || | |||
Sbjct 1807767 ATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACCTCGAAGGGTGATGGTTCT 1807826
Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| || || |||||||| || |||||||||||
Sbjct 1807827 TTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395074704057163
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |