Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq41 123 2e-23 seq32 104 2e-17 >seq41 Length=1307349 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || |||||||||||||| |||||||||||| |||| ||| | || || Sbjct 954345 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 954404 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| |||||||| || | |||||||||||| Sbjct 954405 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 954464 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| || ||||| Sbjct 954465 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTC 954524 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || ||||| || ||||| ||||| |||||| Sbjct 954525 CCCGTAAGGGTCTTGACGAAGATCTGCATCTTGCCT 954560 >seq32 Length=3227256 Score = 104 bits (114), Expect = 2e-17 Identities = 146/204 (72%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || |||||||||||||||||||| || |||| |||| ||||| || Sbjct 1807425 GTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTG 1807484 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | ||||| |||||||| || | ||||||||||||| ||| || Sbjct 1807485 CTTACCAGCAAAGATAAGTCGCTGCTGGTCGGG-GGGATACCCTCCTTGTCCTGAATCTT 1807543 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | || | ||| ||||||| || || ||||| || || Sbjct 1807544 GGACTTCACATTATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGT 1807603 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||| ||||| Sbjct 1807604 GAGAGTCTTGACAAAGATCTGCAT 1807627 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| |||||||||||| | || || |||| || Sbjct 1807647 ACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCG 1807706 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| || | ||||||||||| ||||| | || ||||| ||| | Sbjct 1807707 AGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCCTGA 1807766 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTC-CACGGTAATCG-TCT 45305 || || ||| || | | |||| |||||||| | ||| || | ||| Sbjct 1807767 ATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACCTCGAAGGGTGATGGTTCT 1807826 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || |||||||| || ||||||||||| Sbjct 1807827 TTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074704057163