Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq37 273 2e-68 seq41 93.3 4e-14 >seq37 Length=4018383 Score = 273 bits (302), Expect = 2e-68 Identities = 635/955 (66%), Gaps = 2/955 (0%) Strand=Plus/Minus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||||| |||||||| || || || || ||||| || || |||||| | || || Sbjct 714942 GGCGAGAGAGGCAAGGTTACAGACAGCAACCTCATCAGGGGCACAGTACTCGATGATCTC 714883 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 || || || ||| | || || |||| || |||||||||| || || ||||| Sbjct 714882 AGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 714823 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 |||||||||||||||| | || | || |||||| ||| | ||||| ||| || Sbjct 714822 GTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCGAGGATGGCATA 714763 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGT 23258 ||| | |||| || | | ||| || ||| ||| | | ||| ||||| | || Sbjct 714762 CCAGAGCTTCTGGGCCTTCATG-GTCTTGCGACCCTTGCCGGCCTTCTCATACTTCTCGT 714704 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 ||| || || || || ||||||| |||||||| || ||||| | | | ||||||| Sbjct 714703 ACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGACCGGGACACTCGTTGGGACACA 714644 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | ||| |||| || || || || || |||| || ||||| || ||||| |||| Sbjct 714643 TCAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAG 714584 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 | ||||| ||||| ||||| ||||| || |||||| |||||| || || | | Sbjct 714583 CCAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGA 714524 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 | || || || || || ||||| ||||| ||||| | |||||| || || |||| ||| | Sbjct 714523 ACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCAGGTCGCTTGT 714464 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 |||| |||||||||||||| ||||| ||||||||| | || | ||||| || | || Sbjct 714463 TGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGAAGCATAGGGGTAACAC 714404 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 ||||||| | ||| || || | || || | || || | ||| |||| Sbjct 714403 CGTTGGAGGTACCGTTGGTACCGGCGATGTAGGAGCCAGTGGCACGGATTCGGTGCACGT 714344 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | ||| || || || || || || ||||| || || || ||||| || || | Sbjct 714343 TCAGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGAGTATCATAAA 714284 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 | ||||| || |||||||| || | |||| | ||| || || || | || | | || Sbjct 714283 TACCCTCAATACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGAGAGCTGAGGCTGGG 714224 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | ||| | || ||| || || ||| ||| || || ||| | ||||||| || | Sbjct 714223 GAGTACCCGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTCGACATGAGGT 714164 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 |||| || |||| | | ||||||| || || || |||| || || ||||| | Sbjct 714163 TGTAAGTCTCGAGGACACGCTCAATGTTGTCACCCCAGATGCCGACAGCAACACGCATGA 714104 Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 |||||| || || | ||| || | ||| | ||| |||| || || || || | | Sbjct 714103 TCATGTGCTGGGGGCGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGATCGCTCAA 714044 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || ||||| || | || | |||||||| || | || ||||| || Sbjct 714043 GAGTCTTGAAGCCAAAGTATTGGTATTGGAAGTCACGGTCATAGACAATGGCGGA 713989 >seq41 Length=1307349 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || || || || |||||| | || || || | Sbjct 954556 AAGATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAGGTGGAGTCT 954497 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 954496 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAC 954437 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || ||||| || ||| | || || || ||||||| || Sbjct 954436 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 954377 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || ||||| || ||||| || | ||| | || ||| ||||| Sbjct 954376 AACATCCAGAAGGAGAGCACTCTCCACCTGGTCCTCCGCCTGCGTGGTGGTGCCAAGAAG 954317 Query 31426 CG 31427 || Sbjct 954316 CG 954315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765826075760