Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq54 163 4e-35
>seq54
Length=1261221
Score = 163 bits (180), Expect = 4e-35
Identities = 371/557 (67%), Gaps = 6/557 (1%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || || ||| ||| |||||||| || | | || || |||||||| || || ||
Sbjct 1145453 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 1145512
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|||||||| || |||||||| || ||||| || ||||| ||||| | ||| ||||||
Sbjct 1145513 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAG 1145572
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA---ACTGGCGCTGTCATGT 50136
|| || || || || || |||||||| || | || || | | | | |||| ||
Sbjct 1145573 ATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGAAGAGTCCTTGTCCTGG 1145632
Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196
||||| | |||||| ||||||||||| | ||||| || || || ||||| ||
Sbjct 1145633 ATCCATCTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTG 1145692
Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256
||||||||| || | | | || || | || || || || | || || |
Sbjct 1145693 AAGAGATAGGTTCGCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTC 1145752
Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316
|| || || ||||| || || ||||| || |||||||| |||| |||||||| |||
Sbjct 1145753 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 1145812
Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376
|| || || | ||||| ||| | | ||| || || || || |||||| ||| ||
Sbjct 1145813 TGAACCTCGCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGAGGCGGCG 1145872
Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAA 50433
|| || || | | || || || | |||| | || | | || |||||
Sbjct 1145873 AAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGTTGTTCCAG 1145932
Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493
|| | || ||| || || | ||| | || || | ||||| || || ||||| |||||
Sbjct 1145933 TCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTC 1145992
Query 50494 TTATACATATTCCAGAT 50510
|| ||||| | ||||||
Sbjct 1145993 TTGTACATCTGCCAGAT 1146009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718267875228920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |