Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq54 246 4e-60
seq37 167 3e-36
>seq54
Length=1261221
Score = 246 bits (272), Expect = 4e-60
Identities = 576/852 (68%), Gaps = 39/852 (5%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| ||||||| || ||||| | ||| ||| | ||||||
Sbjct 1146009 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTG 1145950
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG-AGTTT---AT 125134
|||||||| || |||| ||| | | || |||| |||| |||| |||| ||
Sbjct 1145949 TCCAAGGATCTCCACGACTGGAACAACCGCCTGACCT---CTGA-CGAGCAGTTCTTCAT 1145894
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193
|| ||||| | |||||||| |||| ||| || || ||||||||||| ||||| |||||
Sbjct 1145893 CTCTCACATCCTTGCCTTCTTCGCCGCCTCTGACGGCATCGTCAACGAGAATCTTGTTGA 1145834
Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATC 125252
|||||| ||| | || || |||| ||| ||||| ||||| ||||| |||
Sbjct 1145833 G-CGATTCAGCGGCGAGGTTCAGATCCCCGAGGC-TCGATGCTTCTACGGCTTCCAGATC 1145776
Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312
||||| |||||| | ||||| || | ||||| || ||||||| ||||| ||
Sbjct 1145775 ATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAG 1145716
Query 125313 CCG---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369
|| || || ||| || ||||| ||||| || || || | || | || || ||
Sbjct 1145715 CCTTCTCAGCG--AACCTAT-CTCTTCAACGCCATTGAGACCATCCCTTGCATCCGCAAG 1145659
Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429
||||| | |||| || | |||||| | ||| | | ||||| | || | | ||
Sbjct 1145658 AAGGCCGACTGGGCTATCAGATGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGTCTC 1145599
Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489
|| || ||||| ||||| ||||| |||||||| ||| ||||| ||||||| |||
Sbjct 1145598 GTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCTTCCATCTTCTGG 1145539
Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549
||||||||||| || ||||||||||| ||||| | |||||| | || ||||| ||
Sbjct 1145538 CTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGAT 1145479
Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609
||||| || ||| ||||||||| || || | ||| | | | || ||
Sbjct 1145478 GAGGGTCTTCACACCGACTTTGCCTGCCTCCT------CCACT---CCCACCTCAAGGGC 1145428
Query 125610 AGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAA 125666
| ||||| | || ||||| |||| | || |||||||| | || || ||
Sbjct 1145427 CGTGCCAGC---AAGCAGATCATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAG 1145371
Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726
||||| || || || | || || | | | | ||||||||| ||| || |||
Sbjct 1145370 GAGTTCCTGACTGAGGCTCTCCCCTGCGCCCTCCTCGGCATGAACGCCAACCTCATGAAG 1145311
Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATT 125783
||||||| ||||| || || || ||||| || || || ||| || ||| |
Sbjct 1145310 CAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGTCGCCCTG---GGCAACGAGAAGGTC 1145254
Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843
||||| | || ||||| || |||||| | ||| || || | || |||||||||
Sbjct 1145253 TACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAAC 1145194
Query 125844 TTTTTCGAGAAG 125855
|| |||||||||
Sbjct 1145193 TTCTTCGAGAAG 1145182
>seq37
Length=4018383
Score = 167 bits (184), Expect = 3e-36
Identities = 317/463 (68%), Gaps = 14/463 (3%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|||||||| ||||| ||||| || || || || ||| | ||| ||||| | || ||
Sbjct 714442 CGATACGTCGATCAGGGTGGCAACAAGCGACCTGGTGCTTTTGCCATCTACCTTGAGCCC 714501
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || ||||| || | || ||||||| ||| ||| |||||||
Sbjct 714502 TGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAAGAGGTC 714561
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040
|| || | |||||||| || |||||| | || ||| | ||||||||||| |||
Sbjct 714562 CGCGCTCGCGACTTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAG 714621
Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100
|| |||||| |||||| || ||||| ||| || || |||||||| |||| |||
Sbjct 714622 AAGAACGGTG---ACTGGACTCTGATGTGTCCCAACGAGTGTCCCGGTCTCGCCGACTGC 714678
Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160
| || || ||||| ||||| |||| | || | ||| ||||| | | |
Sbjct 714679 TACGGTGAGGAGTTCGAGGCTCTGTACGAGAAGTATG----AGAAGGCCGGCAAGGGTCG 714734
Query 97161 CGAGTCGATGCA---CGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216
| || | ||| | | |||| || ||| | |||||| | ||||||| ||||||||
Sbjct 714735 CAAGACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGG 714794
Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGG 97276
| || | ||| |||||||||||| | || ||||| |||||||| || ||||
Sbjct 714795 TAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGG 714854
Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
||||| ||||||| |||||||| || || | ||||||
Sbjct 714855 TACCATTCGCAGCTCCAACCTGTGCACTGAGATCATCGAGTAC 714897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058245886280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |