Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq54 246 4e-60 seq37 167 3e-36 >seq54 Length=1261221 Score = 246 bits (272), Expect = 4e-60 Identities = 576/852 (68%), Gaps = 39/852 (5%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | ||| ||| | |||||| Sbjct 1146009 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTG 1145950 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG-AGTTT---AT 125134 |||||||| || |||| ||| | | || |||| |||| |||| |||| || Sbjct 1145949 TCCAAGGATCTCCACGACTGGAACAACCGCCTGACCT---CTGA-CGAGCAGTTCTTCAT 1145894 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || ||||| | |||||||| |||| ||| || || ||||||||||| ||||| ||||| Sbjct 1145893 CTCTCACATCCTTGCCTTCTTCGCCGCCTCTGACGGCATCGTCAACGAGAATCTTGTTGA 1145834 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATC 125252 |||||| ||| | || || |||| ||| ||||| ||||| ||||| ||| Sbjct 1145833 G-CGATTCAGCGGCGAGGTTCAGATCCCCGAGGC-TCGATGCTTCTACGGCTTCCAGATC 1145776 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||| |||||| | ||||| || | ||||| || ||||||| ||||| || Sbjct 1145775 ATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAG 1145716 Query 125313 CCG---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 || || || ||| || ||||| ||||| || || || | || | || || || Sbjct 1145715 CCTTCTCAGCG--AACCTAT-CTCTTCAACGCCATTGAGACCATCCCTTGCATCCGCAAG 1145659 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| || | |||||| | ||| | | ||||| | || | | || Sbjct 1145658 AAGGCCGACTGGGCTATCAGATGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGTCTC 1145599 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || ||||| ||||| ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 1145598 GTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCTTCCATCTTCTGG 1145539 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 ||||||||||| || ||||||||||| ||||| | |||||| | || ||||| || Sbjct 1145538 CTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGAT 1145479 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 ||||| || ||| ||||||||| || || | ||| | | | || || Sbjct 1145478 GAGGGTCTTCACACCGACTTTGCCTGCCTCCT------CCACT---CCCACCTCAAGGGC 1145428 Query 125610 AGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAA 125666 | ||||| | || ||||| |||| | || |||||||| | || || || Sbjct 1145427 CGTGCCAGC---AAGCAGATCATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAG 1145371 Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726 ||||| || || || | || || | | | | ||||||||| ||| || ||| Sbjct 1145370 GAGTTCCTGACTGAGGCTCTCCCCTGCGCCCTCCTCGGCATGAACGCCAACCTCATGAAG 1145311 Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATT 125783 ||||||| ||||| || || || ||||| || || || ||| || ||| | Sbjct 1145310 CAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGTCGCCCTG---GGCAACGAGAAGGTC 1145254 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 ||||| | || ||||| || |||||| | ||| || || | || ||||||||| Sbjct 1145253 TACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAAC 1145194 Query 125844 TTTTTCGAGAAG 125855 || ||||||||| Sbjct 1145193 TTCTTCGAGAAG 1145182 >seq37 Length=4018383 Score = 167 bits (184), Expect = 3e-36 Identities = 317/463 (68%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 |||||||| ||||| ||||| || || || || ||| | ||| ||||| | || || Sbjct 714442 CGATACGTCGATCAGGGTGGCAACAAGCGACCTGGTGCTTTTGCCATCTACCTTGAGCCC 714501 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || ||||| || | || ||||||| ||| ||| ||||||| Sbjct 714502 TGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAAGAGGTC 714561 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040 || || | |||||||| || |||||| | || ||| | ||||||||||| ||| Sbjct 714562 CGCGCTCGCGACTTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAG 714621 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 || |||||| |||||| || ||||| ||| || || |||||||| |||| ||| Sbjct 714622 AAGAACGGTG---ACTGGACTCTGATGTGTCCCAACGAGTGTCCCGGTCTCGCCGACTGC 714678 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160 | || || ||||| ||||| |||| | || | ||| ||||| | | | Sbjct 714679 TACGGTGAGGAGTTCGAGGCTCTGTACGAGAAGTATG----AGAAGGCCGGCAAGGGTCG 714734 Query 97161 CGAGTCGATGCA---CGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216 | || | ||| | | |||| || ||| | |||||| | ||||||| |||||||| Sbjct 714735 CAAGACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGG 714794 Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGG 97276 | || | ||| |||||||||||| | || ||||| |||||||| || |||| Sbjct 714795 TAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGG 714854 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||| ||||||| |||||||| || || | |||||| Sbjct 714855 TACCATTCGCAGCTCCAACCTGTGCACTGAGATCATCGAGTAC 714897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058245886280