Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq32 136 9e-27
>seq32
Length=3227256
Score = 136 bits (150), Expect = 9e-27
Identities = 149/197 (76%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| |||||||| || |||||||| || || | |||||| || || || || |||
Sbjct 1807432 GTCGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTACCA 1807491
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || || || || || || || || ||||||||||| | ||
Sbjct 1807492 GCAAAGATAAGTCGCTGCTGGTCGGGGGG-ATACCCTCCTTGTCCTGAATCTTGGACTTC 1807550
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||||||||| | || ||||| || || || ||||| || || || ||
Sbjct 1807551 ACATTATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTC 1807610
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 1807611 TTGACAAAGATCTGCAT 1807627
Score = 114 bits (126), Expect = 3e-20
Identities = 156/215 (73%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | ||||| || ||||| || || ||||| ||||||| |||||
Sbjct 1807643 AAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTC 1807702
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| ||||| || || || || || || | |||||| |||||||| |||||||| |||||
Sbjct 1807703 CTCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATC 1807762
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTC-TAGTGTAATAG 104525
||||||||| | || || || || | || ||| | ||| ||||| || || || |
Sbjct 1807763 CTGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACCTCGAAGGGTGATGG 1807822
Query 104526 -TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| ||||| || || || || || || |||||
Sbjct 1807823 TTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857
Score = 91.5 bits (100), Expect = 3e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || ||||| || || || || || || || | || ||
Sbjct 1808084 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCC 1808143
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || || || ||||| || | ||| ||||||||||| || || || || |||
Sbjct 1808144 TCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC 1808203
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| | || ||||| || | |||||| | || ||||| || || || |||
Sbjct 1808204 TGAATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTC 1808263
Query 104528 TTACCAGT 104535
|| || ||
Sbjct 1808264 TTGCCCGT 1808271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151396880513924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |