Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq41 98.7 9e-16 seq32 84.2 2e-11 >seq41 Length=1307349 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | ||| ||||| || | ||| || ||||||| ||| | |||||| Sbjct 954345 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 954404 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| | || ||||| || || ||||| || || ||||| | Sbjct 954405 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 954464 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||||||| | ||| ||||| | || || |||| ||||| || || Sbjct 954465 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTC 954524 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || || ||||||||||| Sbjct 954525 CCCGTAAGGGTCTTGACGAAGATCTGCAT 954553 >seq32 Length=3227256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/214 (71%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||| | ||||| || |||||||| || | ||| || || | || || || ||| Sbjct 1807419 CACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAG--AGAGGGTGCGACCGTCC 1807476 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || || ||||||| | || ||||| || || ||| |||| || ||||| Sbjct 1807477 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGA-TACCCTCCTTGTCC 1807535 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGG 94973 | ||| || | ||| || | | || || || ||| ||||| || | ||||||| Sbjct 1807536 TGAATCTTGGACTTCACATTATCAATGGTATC-GC-TGGACTCGACCTCCAGAGTGATGG 1807593 Query 94974 TTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || ||||| || |||||||||||||| Sbjct 1807594 TCTTTCCTGTGAGAGTCTTGACAAAGATCTGCAT 1807627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290622825080