Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq54 98.7 2e-16 seq55 95.1 2e-15 >seq54 Length=1261221 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| | | ||||| |||||||| || ||||||||||| ||||| Sbjct 869180 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 869238 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| | |||| Sbjct 869239 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 869279 Score = 80.6 bits (88), Expect = 4e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| | |||| ||||||| || || |||| ||| | Sbjct 869341 TGATCTACGAAGAGACCCGTGGTGTCCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACG 869400 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||| || | || | ||||| | Sbjct 869401 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACTTCTCTCGACGTTGTCTACG 869460 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| || ||||| Sbjct 869461 CCCTCAAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTAA 869504 >seq55 Length=1221210 Score = 95.1 bits (104), Expect = 2e-15 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| ||| || || |||||||| || ||||||||||| || || Sbjct 14317 GCCAAGCGCCACCGCAAGAT-TCTACGTGACAACATCCAGGGTATCACCAAGCCCGCCAT 14259 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||| || ||||| ||||||||| |||||| Sbjct 14258 CCGACGTCTCGCTCGCCGAGGTGGTGTCAAGCGTATCTCTG 14218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075105826379