Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq54 167 3e-36
>seq54
Length=1261221
Score = 167 bits (184), Expect = 3e-36
Identities = 372/557 (67%), Gaps = 6/557 (1%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || || ||| ||| |||||||| || | | || || |||||||| || || ||
Sbjct 1145453 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 1145512
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|||||||| || |||||||| || ||||| || |||||||| || | ||| ||||||
Sbjct 1145513 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAG 1145572
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480
|| || || || ||||| ||||||| || | || || | | | | |||| ||
Sbjct 1145573 ATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGAAGAGTCCTTGTCCTGG 1145632
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540
||||| | |||||| ||||||||||| | ||||| || || || ||||| ||
Sbjct 1145633 ATCCATCTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTG 1145692
Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600
||||||||| || | | | || || | || || || || | || || |
Sbjct 1145693 AAGAGATAGGTTCGCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTC 1145752
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
|| || || ||||| || || ||||| || |||||||| |||| |||||||| |||
Sbjct 1145753 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 1145812
Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720
|| || || | ||||| || | | ||| || || || || |||||| ||| ||
Sbjct 1145813 TGAACCTCGCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGAGGCGGCG 1145872
Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAA 33777
|| || || | | || || || | | ||||| | || | | || |||||
Sbjct 1145873 AAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGTTGTTCCAG 1145932
Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837
|| | || ||| || || | ||| | || || | ||||| || || ||||| |||||
Sbjct 1145933 TCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTC 1145992
Query 33838 TTATACATGTTCCAGAT 33854
|| ||||| | ||||||
Sbjct 1145993 TTGTACATCTGCCAGAT 1146009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946397955480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |