Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq37 158 1e-33 seq32 111 1e-19 seq41 98.7 9e-16 seq4 86.0 6e-12 >seq37 Length=4018383 Score = 158 bits (174), Expect = 1e-33 Identities = 917/1450 (63%), Gaps = 55/1450 (4%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || |||||||| |||||||| || | ||||||||| || | ||| || ||| | || Sbjct 715508 TTAACGACCTGGAACTCGCCAGCGAGGACACGACGCTGGTAGATGTTGGAGGTGTAAGGC 715449 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| || |||||||| || | || | || ||||||||| || | | Sbjct 715448 TCGAAGCACTCGTTGTTACCCAGGATCTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGC 715389 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || ||||| || |||| ||||| | ||| | || | |||| |||| Sbjct 715388 AGCAGACTG--TTGCGGGTACCATGCTCCTTGACCTGCTCCCTGAGAGACTCCCAGTCCC 715331 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || || ||| |||||| |||||||||| |||| | ||| ||||| ||| || Sbjct 715330 AGAGATCAGAGGGCTTCACGTTCCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGAG 715271 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCT---CGCAACTCGCCTCCA 145352 ||| | |||| | |||| ||| ||||| |||| || || || || Sbjct 715270 AGCCCTTGAAGGTAGAGTAAGGACCCTCCTCCTTGGCCAGCTGCACGGAA---GCAGTCA 715214 Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412 |||| | || || ||||| || ||| |||| ||| || ||| || Sbjct 715213 GAGCAGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTCTCGAGCCTCAGGAGACT 715154 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472 || | ||||||||||| | ||||||||||| || ||||| | || ||||| || | Sbjct 715153 CGAAAGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACGCCAATAG 715094 Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAA 145532 | || ||| ||||||||| | | || | || || | || || || | Sbjct 715093 GTCGGTGTCGCATGTTGCTGTTGCGAGCTTCAGGAACGGGGTAGTGGTTCACATCAATGA 715034 Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACC 145592 | | |||| ||| || || || || ||| | | ||| ||| | |||||| | | Sbjct 715033 TCCTGTTCAGGTTGCGAACGACAGTCTGTGTGACCTCGTGCAGCTTCTGGAAGTCATAGC 714974 Query 145593 GAGCCTCGTCAACG---ACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTG 145649 ||||||||| | | | | || | | ||||| || || | ||||| || | Sbjct 714973 AGGCCTCGTCATAGTTGATGAAAGAGGGA---AGGGCGAGAGAGGCAAGGTTACAGACAG 714917 Query 145650 CCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGG 145709 | ||| || | | | | ||| | | |||||| | ||||| ||| | |||| Sbjct 714916 CAACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGG 714857 Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769 | ||||| || | ||| || || || | |||||| ||||||||||||||| | || Sbjct 714856 TACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGT 714797 Query 145770 CGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCA--- 145823 |||||||| ||| | ||| | ||| | | | | || | ||| || || Sbjct 714796 TACCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAGAGC---TTCTGGGCCTTCATGG 714740 Query 145824 -CCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882 | ||| | | ||||| ||| | || ||| ||| || |||| ||| | | Sbjct 714739 TCTTGCGACCCTTGCCGGCCTTCT----CATACTTCTCGTACAGAGCCTCGAACTCCTCA 714684 Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942 |||||||| |||| || |||||||||| ||||||||||||||| | ||| | ||||| Sbjct 714683 CCGTAGCAGTCGGCGAGACCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTC 714624 Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCT 146002 | ||| |||| ||| || | ||| || | ||| || || | ||||||||| || Sbjct 714623 TTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAAGTCGCGAGC- 714565 Query 146003 TTGCAATCCTCAGC--ACCCATGTTTC--GCTTCAAATTAAGCACACT-ATAGATGTCCG 146057 || |||| | || || ||| || || | ||| | ||| | ||| || | Sbjct 714564 --GCGGACCTCTTCCTTGCCGTGGTTCTTGC-GCAGGTCAAGGA-ACTCAAAGACATCTG 714509 Query 146058 CGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCA 146114 ||||||| || |||| |||| ||| | || || ||| ||||||||||| || | Sbjct 714508 CGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCCACCCTGATCGA 714449 Query 146115 CGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGT 146174 ||| || | ||||||| ||||| || | ||| || || ||| ||| |||| Sbjct 714448 CGTATCGGGCAGTGTTGTTGAAGACACGAAGCATAGGGGTAACACCGTTGGAGGTACCGT 714389 Query 146175 TCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGC 146234 | ||| | || || ||| || || | | || || |||| || | ||| | Sbjct 714388 TGGTACCGGCGATGTAGGAGCCAGTGGCACGGATTCGGTGCACGTTCAGACCAATACCAC 714329 Query 146235 C-GCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTA 146293 | ||| | |||||| || ||| ||| ||| || || || || || ||||| || Sbjct 714328 CAGCCAT-CTTGGAAATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTCAATACTG 714270 Query 146294 TC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCG 146351 || |||| ||| ||| || ||||| ||| | | ||| | | || || ||||| Sbjct 714269 TCCTCCTTC--ATGTCGACAAGGAAGCATGAGGAGAGCTGAGGCTGGGGAGTACCCGCAT 714212 Query 146352 AGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCG---ATACGTTT 146408 ||| | || ||| || || || || | || |||| ||| | || || | Sbjct 714211 TGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTT---GCTCGACATGAGGTTGTAAGTCT 714155 Query 146409 CGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTT 146468 ||| | | ||||| ||| || ||||| | ||| || ||||||| |||||| | Sbjct 714154 CGAGGACACGCTCAATGTTGTCACCCCAGATGCCGACAGCAACACGCATGATCATGTGCT 714095 Query 146469 GGGGCCGCTC 146478 |||| ||||| Sbjct 714094 GGGGGCGCTC 714085 >seq32 Length=3227256 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | ||| | ||| |||||||| || |||||||||||| Sbjct 1808068 GCCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 1808127 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||| ||||||||||| ||| | || | |||||||| || ||||| Sbjct 1808128 AAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGG 1808187 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || ||| ||||| | || | ||||| | |||||| | Sbjct 1808188 GATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTCAAC 1808247 Query 131187 GTCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || || || Sbjct 1808248 CTCGAGGGTGATGGTCTTGCCCGT 1808271 Score = 109 bits (120), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | |||||| ||||| ||||||||||| || Sbjct 1807402 CCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAG 1807461 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | |||||||||| ||| ||| Sbjct 1807462 AGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGT-CGGGGGG 1807520 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | |||||| ||||||||| Sbjct 1807521 ATACCCTCCTTGTCCTGAATCTTGGACTTCACATTATCAATGGTATCGCTGGACTCGACC 1807580 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || ||||| || || || |||||||| Sbjct 1807581 TCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACAAAGATCTGCAT 1807627 >seq41 Length=1307349 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || |||||||| ||||||| |||||| ||||| |||||||| || || | Sbjct 954362 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 954421 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | ||||||||||| || || || || || ||||| ||| || ||||| | Sbjct 954422 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 954481 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | || |||| ||||| | || | ||| | || || || || || || || || Sbjct 954482 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGAC 954541 Query 131223 GAAAATCTGCAT 131234 ||| |||||||| Sbjct 954542 GAAGATCTGCAT 954553 >seq4 Length=1115785 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | || || ||||| ||||||||||| ||| ||| Sbjct 972052 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 972111 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||| ||||| || || || || ||||| ||| || ||||| | | Sbjct 972112 TCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 972171 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| |||| ||| | ||| || || || || || || |||| Sbjct 972172 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 972231 Query 131225 AA 131226 || Sbjct 972232 AA 972233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012192283520