Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq32 87.8 1e-12
>seq32
Length=3227256
Score = 87.8 bits (96), Expect = 1e-12
Identities = 142/203 (70%), Gaps = 1/203 (0%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| || || ||||| || ||||||||||| | | ||| ||||||||| ||
Sbjct 1807426 TGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGC 1807485
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
|| || ||| | ||||| ||||| |||| | || | ||||| ||||| ||| |
Sbjct 1807486 TTACCAGCAAAGATAAGTCGCTGCTGGT-CGGGGGGATACCCTCCTTGTCCTGAATCTTG 1807544
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
|||||| | | | || |||| || ||| |||| |||||||| ||||| ||
Sbjct 1807545 GACTTCACATTATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTG 1807604
Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935
|| || |||||||| ||||||||
Sbjct 1807605 AGAGTCTTGACAAAGATCTGCAT 1807627
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| || |||||||| || |||||||||||| | ||| | |||||
Sbjct 1807644 AGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCC 1807703
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | ||| ||||| || | ||||| ||||||||||| ||| | || || || ||
Sbjct 1807704 TCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCC 1807763
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTC-CACGGTGATGGT 16902
||| | | |||||| | | | |||||| | ||| || | |||||||||
Sbjct 1807764 TGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACCTCGAAGGGTGATGGT 1807823
Query 16903 T-TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| ||||| || || || ||||| || || |||||
Sbjct 1807824 TCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405087491487970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |