Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq54 156 5e-33 >seq54 Length=1261221 Score = 156 bits (172), Expect = 5e-33 Identities = 379/568 (67%), Gaps = 11/568 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| || || || || || | ||| ||| ||| || | Sbjct 1145452 GCAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 1145511 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||||||||| || || |||||||| |||| || || Sbjct 1145512 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAA 1145571 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || ||||| || || || || | ||| | ||||| | | || | || Sbjct 1145572 GATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGAAGAGTCCTT-GTCCT 1145630 Query 93271 -GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||||| | | |||||| ||||| || || || ||||| | || || || |||| Sbjct 1145631 GGATCCATCTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGT 1145690 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAA-TCTCGT--ATGTATGTATCGATTAACAGAGAAT 93386 | || || || |||| | ||| ||| | ||||| || || || | ||| || | Sbjct 1145691 TGAAGAGATAGGTTCGC---TGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGT 1145747 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 | | || || |||| |||||||| || ||||| |||||||| |||| ||| || | Sbjct 1145748 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGG 1145807 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 |||||| || || |||| ||| || ||||| || ||||| || || || || | Sbjct 1145808 GGATCTGAACCTCGCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGAGG 1145867 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTAT 93563 | || || || || | || || || || | ||| ||| | | | || | Sbjct 1145868 CGGCGAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGTTGT 1145927 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||| ||| ||||| || || ||||| | || ||| ||||||| || || || || | Sbjct 1145928 TCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGG 1145987 Query 93624 CTTTTTTGTACATATCCCATATGTCTTG 93651 | || |||||||| | ||| || | ||| Sbjct 1145988 CCTTCTTGTACATCTGCCAGATCTATTG 1146015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860083041720