Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq54 156 5e-33
>seq54
Length=1261221
Score = 156 bits (172), Expect = 5e-33
Identities = 379/568 (67%), Gaps = 11/568 (2%)
Strand=Plus/Plus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| ||||||||||| || | ||| || || || || || | ||| ||| ||| || |
Sbjct 1145452 GCAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 1145511
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
||| || | || || || ||||||||||| || || |||||||| |||| || ||
Sbjct 1145512 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAA 1145571
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270
||||| || ||||| || || || || | ||| | ||||| | | || | ||
Sbjct 1145572 GATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGAAGAGTCCTT-GTCCT 1145630
Query 93271 -GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329
||||||| | | |||||| ||||| || || || ||||| | || || || ||||
Sbjct 1145631 GGATCCATCTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGT 1145690
Query 93330 TAAATAGGTAATCTCGCTCGTCCGAA-TCTCGT--ATGTATGTATCGATTAACAGAGAAT 93386
| || || || |||| | ||| ||| | ||||| || || || | ||| || |
Sbjct 1145691 TGAAGAGATAGGTTCGC---TGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGT 1145747
Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446
| | || || |||| |||||||| || ||||| |||||||| |||| ||| || |
Sbjct 1145748 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGG 1145807
Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506
|||||| || || |||| ||| || ||||| || ||||| || || || || |
Sbjct 1145808 GGATCTGAACCTCGCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGAGG 1145867
Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTAT 93563
| || || || || | || || || || | ||| ||| | | | || |
Sbjct 1145868 CGGCGAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGTTGT 1145927
Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623
||| ||| ||||| || || ||||| | || ||| ||||||| || || || || |
Sbjct 1145928 TCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGG 1145987
Query 93624 CTTTTTTGTACATATCCCATATGTCTTG 93651
| || |||||||| | ||| || | |||
Sbjct 1145988 CCTTCTTGTACATCTGCCAGATCTATTG 1146015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860083041720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |