Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq32 123 2e-23
seq41 107 2e-18
seq4 91.5 1e-13
>seq32
Length=3227256
Score = 123 bits (136), Expect = 2e-23
Identities = 147/198 (74%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | || || || || ||||||| || || || ||| |
Sbjct 1807627 ATGCAGATCTTTGTCAAGACTCTCACAGGAAAGACCATCACTCTGGAGGTCGAGTCCAGC 1807568
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | || || ||||| |||||||||||||| || ||||| ||
Sbjct 1807567 GATACCATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCC-CCCGACCAG 1807509
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| ||||| || || ||| | ||||| |||||| |||| || ||||||
Sbjct 1807508 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTCTCTGACTACAAC 1807449
Query 22399 ATTCAAAAAGAATCCACC 22416
||||| || ||||| |||
Sbjct 1807448 ATTCAGAAGGAATCGACC 1807431
Score = 118 bits (130), Expect = 9e-22
Identities = 134/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| || || || || || | |||||| | ||| || ||||
Sbjct 1808271 ACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACCATCGACAATGTCAAGTCG 1808212
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| || || || ||||| || || || || || ||||||||
Sbjct 1808211 AAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATTTTCGCCGGCAAG 1808152
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | |||||| ||||||| | |||||||||||||| || || || |||||| | |||
Sbjct 1808151 CAGCTTGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCCACCCTCCAT 1808092
>seq41
Length=1307349
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || || || || || | || || || || |||| ||||| ||||| |
Sbjct 954556 AAGATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAGGTGGAGTCT 954497
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
|||| ||| | ||| | |||| || || || ||||||||||| ||||| |||||
Sbjct 954496 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAC 954437
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || ||||| ||||| || || ||| | |||||| ||||||| | ||| |||
Sbjct 954436 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 954377
Query 22396 AACATTCAAAAAGA 22409
||||| || || ||
Sbjct 954376 AACATCCAGAAGGA 954363
>seq4
Length=1115785
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || || || || |||| || || || || || | || ||| |
Sbjct 972233 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 972174
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || ||||||||||| ||||| || ||||| || || ||
Sbjct 972173 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACT 972114
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || || ||||| ||| | |||||| ||| || ||||||| |||||||| || ||
Sbjct 972113 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 972054
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727473110195
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |