Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq32 140 7e-28 seq43 111 3e-19 seq54 105 1e-17 >seq32 Length=3227256 Score = 140 bits (154), Expect = 7e-28 Identities = 436/668 (65%), Gaps = 9/668 (1%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| ||||||||||||||||||||||| || | || ||||| || | | Sbjct 1068853 GTCGGCTCCCTGTCTGGTGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCCATGCTTCAG 1068912 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || |||||||| || ||||| || || |||||||| | || | ||||| | || Sbjct 1068913 CGCGCTGATGTCCTTCTCCTTGACGAACCTACCAACCATCTTGATGTCGCCAACATCGCA 1068972 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | || || | | || || || || ||||||||| Sbjct 1068973 TGGCTCGAGAACTACCTCAAGACTCATCCCGATATCACCTCTCTGATCGTGTCTCACGAC 1069032 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 ||||| ||||| || || | ||| ||| ||||| |||| || ||||||| Sbjct 1069033 TCTGGTTTCCTCGACAATGTTACCACTGATATCTACCACTACGAGCCCAACAAGAAGCTC 1069092 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTAC 279995 || ||| || ||| || |||| || || | | || || ||||| |||| Sbjct 1069093 GCCTGCTACAAAGGTAACTTGGCTGCCTTTGTCGAGATCCGACCCGAGGCCAAGAGCTAC 1069152 Query 279996 TATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGA-GGG 280054 || |||| || | ||| || | ||| | |||||| || ||| ||| || || Sbjct 1069153 TACACCCTGTCGGCCTCCAACGTCCAGTTCAAGTTCCCTCCTCC-TGGTATCTTGACCGG 1069211 Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAA 280114 ||| || | | ||| || || || | | |||||| | | || ||||| Sbjct 1069212 TGTCAAGTCCATGACTCGTGCCATTATCCGCATGAGCAACGTCTCTTACACCTACCCCAA 1069271 Query 280115 TGGCCCCAA---CATC--TTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATT 280169 |||| ||| |||| | || || ||| | ||| | | || || || || Sbjct 1069272 -GGCCACAAAGCCATCCTTGCATGAG-GTCTCTTGCCAGCTGACCCTGTCGTCCCGTGTT 1069329 Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 | ||||||| ||||| || || || ||||| || || ||||| | || || |||||| Sbjct 1069330 GCCATCATTGGCCCCAACGGAGCTGGCAAGTCGACTCTCATCAAGCTGCTTACCGGCGAG 1069389 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | ||| || ||| |||||| || ||| |||| || | ||| || Sbjct 1069390 ACCATTCCTACTACCGGAAAGGTTGAGAAGCACCCTAACTTGCGTATCGGCTACATCAAG 1069449 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 ||||||||| | | ||| | |||| || || || | |||||| ||||| ||| | ||| Sbjct 1069450 CAGCACGCTCTGGAGCACGTTGAGATGCATCTCGAGAAGACTCCCAACCAGTACCTCCAG 1069509 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 1069510 TGGCGTTA 1069517 >seq43 Length=2522723 Score = 111 bits (122), Expect = 3e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| || || || ||||| ||||| || |||||||| || ||||| ||||| Sbjct 2119730 CTCTCGTATTGCCGTTATCGGTCCCAACGGTGCCGGCAAGTCTACTCTGATCAACGTCCT 2119789 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | |||| ||||| ||| |||| ||||| || || || Sbjct 2119790 CACTGGTGAGCTCATCCCCACCGAGGGTGAGATTTACCAGCACGAGAACATCCGTATCGC 2119849 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| ||||| || ||||||||||||| |||||| | | Sbjct 2119850 CTACATCAAGCAGCACGCTTTCGCTCACATTGATAACCACCTGGACAAGACTCCCTCCGA 2119909 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCGC 280391 ||||| |||||||| | | || | ||| |||||| ||| | |||| ||| Sbjct 2119910 GTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCGC 2119961 Score = 96.9 bits (106), Expect = 7e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 2118915 GGCGAGGATCTCTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 2118974 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| ||||||| ||| | || || ||||| ||||||||| || | Sbjct 2118975 CAGACTCACCTCCGTCTCAAGCGAGGCCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 2119034 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 2119035 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 2119093 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 2119094 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 2119135 >seq54 Length=1261221 Score = 105 bits (116), Expect = 1e-17 Identities = 379/588 (64%), Gaps = 21/588 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||| ||||| ||||||||||||||||||||| | Sbjct 1145186 TCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCA 1145245 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | ||| || || |||| || ||||| || || ||||| | Sbjct 1145246 GACTTGTAGACCTTCTCGTTGCCCAGGGCGACGAGGAGACGGTCGGCGACGAACTCGATG 1145305 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | | ||||||||| | | || || | |||||| | | Sbjct 1145306 TACTGCTTCATGAGGTTGGCGTTCATGCCGAGGAGGGCGCAGGGGAGAGCCTCAGTCAGG 1145365 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || ||| || || || | || ||| | | ||| | | | | Sbjct 1145366 AACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTGGATGATCTGCTTGCTGGCA 1145425 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | || || || | |||| ||||| | |||| | ||| |||||||| || Sbjct 1145426 CGGCC----CTTGAGGTGGGAGTGGAGGAGGCAGGCAAAGTCGGTGTGAAGACCCTCATC 1145481 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | ||| || ||||| | ||||| ||| ||||||| Sbjct 1145482 ACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCA 1145541 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | ||||| ||| ||| | | ||||||||| | | ||||| || Sbjct 1145542 GAAGATGGAAGCAAAGGCACCACTGAAGAAGATACCCTCGACGGCAGCGAAGGCAACGAG 1145601 Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTG--TGCCCATGCTGCC 252030 |||| |||||| || ||||||||| || | |||| ||||| | ||| Sbjct 1145602 ACGCTGAGCAAAGGAAGAGTCCTTGTCCTG-GA----TCCATCTGATAGCCCAGTCGGCC 1145656 Query 252031 TTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCG 252090 ||||| | | ||||| || || || || | |||||| || | |||| | | Sbjct 1145657 TTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGAAGAGATAGGTTCGCTGAGAAGGC 1145716 Query 252091 TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||| |||| | |||| || || ||||| |||| || |||||| Sbjct 1145717 TCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATG 1145764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835443576623