Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq41 161 2e-34 seq32 158 2e-33 seq43 134 3e-26 seq30 84.2 4e-11 >seq41 Length=1307349 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || ||| ||| || |||||||| || ||| Sbjct 954327 CCACCACGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 954386 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || |||||||| ||| Sbjct 954387 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGA 954446 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 954447 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 954506 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||| |||||||||||||| |||||||| Sbjct 954507 TCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 954553 >seq32 Length=3227256 Score = 158 bits (174), Expect = 2e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || ||||| || |||||||| || ||| | Sbjct 1807629 CCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTG 1807688 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || |||| |||||||| || ||| Sbjct 1807689 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 1807748 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || |||||||| | ||| ||| ||||| ||||| | ||||| || Sbjct 1807749 ATTCCTTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACC 1807808 Query 68415 TCCAAGG-TGATGGTT-TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| |||||||| ||||| ||||| ||||||||||| || ||||| Sbjct 1807809 TCGAAGGGTGATGGTTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857 Score = 104 bits (114), Expect = 4e-17 Identities = 426/666 (64%), Gaps = 7/666 (1%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||||| |||||||||||| ||| | || || || |||||| || | | | Sbjct 1069517 TAACGCCACTGGAGGTACTGGTTGGGAGTCTTCTCGAGATGCATCTCAACGTGCTCCAGA 1069458 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| ||| || |||||| || || ||| Sbjct 1069457 GCGTGCTGCTTGATGTAGCCGATACGCAAGTTAGGGTGCTTCTCAACCTTTCCGGTAGTA 1069398 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | ||||||||| || | ||||||||| || | |||||| || || ||||||||| Sbjct 1069397 GGAATGGTCTCGCCGGTAAGCAGCTTGATGAGAGTCGACTTGCCAGCTCCGTTGGGGCCA 1069338 Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TGCTGAAGAT--CTC 225213 || | | ||| ||||| |||| | | ||| | || | ||| | ||| || Sbjct 1069337 ATGATGGCAACACGGGACGACAGGGTCAGCTGGCAAGAGACCTCATGC-AAGGATGGCTT 1069279 Query 225214 AGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGGA 225273 | | | | |||| | | | ||| | || || |||||||| | |||| Sbjct 1069278 TGTGGCCTTGGGGTAGGTGTAAGAGACGTTGCTCATGCGGATAATGGCACGAGTCATGGA 1069219 Query 225274 AGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAG 225333 | | ||| || || || || ||||||| ||| | | | || ||| Sbjct 1069218 CTTGACACCGGTCAAGATACCAGGAGGAGGGAACTTGAACTGGACGTTGGAGGCCGACAG 1069159 Query 225334 GTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTG 225393 | |||||| ||||||||||| | | || || |||| || ||| || || Sbjct 1069158 GGTGTAGTAGCTCTTGGCCTCGGGTCGGATCTCGACAAAGGCAGCCAAGTTACCTTTGTA 1069099 Query 225394 CTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAA 225453 | |||||| ||| |||||| || || | | | || ||| ||||| Sbjct 1069098 GCAGGCGAGCTTCTTGTTGGGCTCGTAGTGGTAGATATCAGTGGTAACATTGTCGAGGAA 1069039 Query 225454 GCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGAT 225513 ||||||||||| ||||| || | || | | | | | |||||||| | Sbjct 1069038 ACCAGAGTCGTGAGACACGATCAGAGAGGTGATATCGGGATGAGTCTTGAGGTAGTTCTC 1068979 Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 ||||||||| | |||| ||| || | ||||| ||||||||||| || || |||| || Sbjct 1068978 GAGCCATGCGATGTTGGCGACATCAAGATGGTTGGTAGGTTCGTCAAGGAGAAGGACATC 1068919 Query 225574 AGCATCAATG-AGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGG 225632 ||| | || || ||||| || | |||| ||||||||| ||||| || || ||||||| Sbjct 1068918 AGC-GCGCTGAAGCATGGCTCGGGCCAGAGCCAGCTTCATCTTCCAACCACCAGACAGGG 1068860 Query 225633 AGCCGA 225638 |||||| Sbjct 1068859 AGCCGA 1068854 >seq43 Length=2522723 Score = 134 bits (148), Expect = 3e-26 Identities = 443/671 (66%), Gaps = 41/671 (6%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | ||| ||| ||||||||||||| ||||| || |||||| Sbjct 2119924 CGCCACTGGATGTACTCGGAGGGAGTCTTGTCCAGGTGGTTATCAATGTGAGCGAAAGCG 2119865 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | || || || Sbjct 2119864 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAAATCTCACCCTCGGTGGGG 2119805 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| || |||||||| ||||| || |||| |||||| ||||| ||||| || || Sbjct 2119804 ATGAG-CTCACCAGTGAGGACGTTGATCAGAGTAGACTTGCCGGCACCGTTGGGACCGAT 2119746 Query 225160 CACGCCAATCCGGGATGACATTGCAAC-CTG---CGAGTTCACGTTG--CTGAAGATCTC 225213 ||| |||| || || | || | | ||| ||| | || | ||| | | Sbjct 2119745 AACGGCAATACGAGA-GCCAAGAGAGCACTGGAAAGAGATGTCGGAGATCTGGGGCTTGG 2119687 Query 225214 AGG-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGT 225266 ||| |||| |||| |||| || | ||||||| |||||| | Sbjct 2119686 AGGTACCAG---GGTACTGGAAGGACATCTTGGTGGCACGCAG------GATGGCCTTGG 2119636 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||||||||| | ||| | || | | | Sbjct 2119635 CCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAATTGGAACTCGATCTCGGAGG 2119576 Query 225327 CCTTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGT 225383 | || || ||||||||| |||| ||| | | || || || |||| ||||| Sbjct 2119575 CACCGAGCTCATAGTAAGATCGGGCAG--AGGGGACACGCTG-GACAAAGGCAGCCAGGT 2119519 Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442 | || ||| | ||||||||| | |||||| ||||| || ||| | ||| || Sbjct 2119518 TACCACGGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGAACGATGTGCTG-GCAGACG 2119463 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTT 225501 ||| |||||||||||||||||||| || |||||||| | || | | | | | Sbjct 2119462 TTGTCGAGGAAGCCAGAGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGA-GTTGAT 2119407 Query 225502 GAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAG 225561 ||||| | |||||| ||||| | || |||| ||||| ||||| || || || Sbjct 2119406 GAGGTACTCCTCGAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCATCGAG 2119347 Query 225562 AAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCC 225621 |||||| || || | | | || || || || || | ||||||||| ||||| || Sbjct 2119346 AAGCAGAATATCGGGAGCCTCGAAGACAGCACGGCACAGGGCCAGCTTCATCTTCCAACC 2119287 Query 225622 CCCGGACAGGG 225632 ||||| |||| Sbjct 2119286 ACCGGAGAGGG 2119276 >seq30 Length=3684817 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| |||||||| | ||||||| ||||||||||| | || || | || Sbjct 2692111 CCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCCCCTCG 2692052 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||| ||||| ||||| | ||||||||| || ||||| Sbjct 2692051 GGGGTGATGGTCTTTCCAGTGAGAGCCTTGACGAAGATTTGCAT 2692008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621213411160