Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq54 416 5e-111 seq37 414 2e-110 >seq54 Length=1261221 Score = 416 bits (460), Expect = 5e-111 Identities = 616/858 (72%), Gaps = 24/858 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| |||||||||||||| ||| Sbjct 1146009 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTG 1145950 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAA 42415 ||||||| || || ||| || | |||| |||| |||| ||| || Sbjct 1145949 TCCAAGGATCTCCACGACT-GGAACAACCGCCTGACCTCTGACGAGCAGTTCTTCATCTC 1145891 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||||||||||||||||||||| ||||| ||||| || | | Sbjct 1145890 TCACATCCTTGCCTTCTTCGCCGCCTCTGACGGCATCGTCAACGAGAATCTTGTTGAGCG 1145831 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || |||||||||||||||||||| || Sbjct 1145830 ATTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 1145771 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| |||||| ||| || Sbjct 1145770 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATTGACACCTACATCAAGGAGCC 1145714 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 |||| | | || ||||| ||||| ||||| || || |||||| |||||||| Sbjct 1145713 TTCTCAGCGAACCTATCTCTTCAACGCCATTGAGACCATCCCTTGCATCCGCAAGAAGGC 1145654 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| ||| |||||| || ||| | | || | || | || || || Sbjct 1145653 CGACTGGGCTATCAGATGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGTCTCGTTGC 1145594 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| | ||||||||||| ||||||||| || ||||| || ||||||||||||||||| Sbjct 1145593 CTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCTTCCATCTTCTGGCTCAA 1145534 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || ||| || |||||||| || |||||||| ||||| |||||| | || |||| Sbjct 1145533 GAAGCGTGGTCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 1145475 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCG 42890 | || || | ||||||||||||||||| ||| ||||||| ||| | ||| | Sbjct 1145474 GTCTTCACACCGACTTTGCCTGCCTCCTCCACTC---CCACCTCAAGGGCCGTGCCAGC- 1145419 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 ||| || ||| || ||||||||| || ||||| || ||| |||||||||| || Sbjct 1145418 AAGCAGATCATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTGACT 1145359 Query 42951 CAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || | || ||| |||| ||||||||||| | |||||||| |||||||| || Sbjct 1145358 GAGGCTCTCCCCTGCGCCCTCCTCGGCATGAACGCCAACCTCATGAAGCAGTACATCGAG 1145299 Query 43011 TACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTC-AGCCGCCTCTACAACACGCCG 43067 | ||||||||||| |||||| || ||| |||| | || | ||||||| | | Sbjct 1145298 TTCGTCGCCGACCGTCTCCTCGTCGCC--CTGGGCAACGAGAAG-GTCTACAAGTCTGCC 1145242 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 |||||||||||| |||||||||||||| ||| |||||||||||||| ||||||||| Sbjct 1145241 AACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAG 1145182 Query 43128 CGCGTCGCCGACTACCAG 43145 || |||| ||||||||| Sbjct 1145181 CGTGTCGGTGACTACCAG 1145164 >seq37 Length=4018383 Score = 414 bits (458), Expect = 2e-110 Identities = 1229/1874 (66%), Gaps = 71/1874 (4%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||| | ||| || |||| |||| || | ||||||||||||||| ||||| || | Sbjct 715846 TGAACTGAATGGGAGCAGCGGCAGCCTGCGTTCGCAGGTAGTACATGCCCGTCTTCAGAC 715787 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | |||| || | ||||||| || | ||| ||| || | || Sbjct 715786 CGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGG---------GT 715736 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 ||| || || |||||| |||||| ||| || | ||||| | || || || | Sbjct 715735 CCTT---CATGTGGATGTTGAGAGACTGGGACTGATCAATGAAGGCACCTCGGTCGGCTG 715679 Query 243921 CCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGT 243980 |||| || || | ||| || ||||| || | |||||||||| | ||||| | Sbjct 715678 CCATCTGGACGACCTGGCGCTGGGAAATCTCCCACACGGTCTTGTAGAGAGCCTTGACCT 715619 Query 243981 GCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCA 244040 |||||| ||||||||| | || || || | | |||| || | || Sbjct 715618 CAGCGGGGATGTTGGGGATGTTCTGGATGGAACCGTTCTCAGCAATGATTCGGTTCTTCA 715559 Query 244041 TGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTTCAC 244095 || ||| ||||||||||| | || | || ||| || ||||| | || || Sbjct 715558 TGGAATCCGACCACAGGCCCATATCGA-CGAGATCCTTGAGCAACCAGGGG----TTAAC 715504 Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||| ||||| || | || || || |||||||||| |||| | || ||||||| Sbjct 715503 GACCTGGAACTCGCCAGCGAGGACACGACGCTGGTAGATGTTGGAGGTGTAAGGCTCGAA 715444 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 || ||| |||| ||||| ||||||| ||||| ||||| |||||||| | | |||||| Sbjct 715443 GCACTCGTTGTTACCCAGGATCTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGCAGCAG 715384 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCC 244275 |||||| | || ||| || || | ||||| | ||||||||| | | Sbjct 715383 ACTGTTGCGGGTACCATGCTCCTTGACCTGCTCCCTGAGAGACTCCCAGTCCCAGAGATC 715324 Query 244276 CGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGG 244335 ||||| | || |||| ||||||||| ||||| || | |||| | | || Sbjct 715323 --AGAGGGCTTCACGTT-------CCACATGTCGAACTGGAGAATACCCTCAGAGGCAGG 715273 Query 244336 GCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGA 244394 ||||| | |||| | ||| ||||| || || |||||||| || | ||| | Sbjct 715272 AGAGCCCTTGAAGGTAGAGTAAGGACCCTCCTCCTTGGCCAGCTGCACGGAAGCAGTC-A 715214 Query 244395 GGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGG 244454 | || || | |||||||||||| |||||| |||||||| || || |||| | | || Sbjct 715213 GAGCAGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTCTCGAGCCT--CAGGAGA 715156 Query 244455 T--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512 ||| || |||| || | ||| | ||||| || ||||| || |||| ||| || Sbjct 715155 CTCGAAAGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACGCCAAT 715096 Query 244513 GGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 |||| ||||||| ||||| | ||||| || |||||||| ||| | || || Sbjct 715095 AGGTCGGTGTCGCATGTTGCTGTTGCGAGCTTCAGGAACGGGGTAGTGGTTCACATCAAT 715036 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632 | | |||| |||||||| || | | ||| ||| |||| ||| ||||| || Sbjct 715035 GATCCTGTTCAGGTTGCGAACGACAGTCTGTGTGACCTCGTGCAGCTTCTGGAAGTCATA 714976 Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 | ||| ||||| | | |||| || | ||||||| ||| || Sbjct 714975 ---GCAGG---CCTCGTCATAGTTGATG------AAAGAGGGAAGGGCGAGAGAGGCAAG 714928 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 ||| ||||| || ||||| || | | ||||| || ||||| ||||| ||||| Sbjct 714927 GTTACAGACAGCAACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGGTTGGA 714868 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || ||||| ||||||| || || ||| |||| ||||||| ||||||||||| Sbjct 714867 GCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAG 714808 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872 ||||||||| || |||||| ||| || |||||| | | |||||| | | || Sbjct 714807 CATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAGAGCTTCTGGGC 714748 Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTC 244932 ||| | ||| ||||| ||||||| | ||| || |||||| ||||||||||| Sbjct 714747 CTTCATGGTCTTGCGACCCTTGCCGGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTC 714688 Query 244933 GGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGC 244991 || || ||| | || ||||| ||| || ||| ||||| ||| |||| || | Sbjct 714687 CTCACCGTAGCAGTCGGCGAGACCGGGACACT-CGTTGGGACACATCAGAGTCCAGTCAC 714629 Query 244992 CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCC 245051 || | || ||| | || ||||||||| ||||| |||||||| ||| |||| | ||| | Sbjct 714628 CGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAAGTCGC 714569 Query 245052 TGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGA 245111 | | ||| ||| ||| |||||| | ||| || | || |||||||| || Sbjct 714568 GAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTG 714509 Query 245112 CGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCA 245171 ||||||||||||| | ||||| || | || || || ||||||||||| ||||| || | Sbjct 714508 CGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCCACCCTGATCGA 714449 Query 245172 CCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGG 245227 | | ||| || |||||||| || || |||| | ||||| ||| Sbjct 714448 ----CGTATCGGGCAGTGTTGTTGAAGACACGAAGCATAGGGGTAACACCGTTGGAGGTA 714393 Query 245228 CCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTG-ATGGACATGCCTAG 245286 |||||||| || |||||||| ||| || | | || | | || | | || || | Sbjct 714392 CCGTTGGTACCGGCGATGTAGGAGCCAGTGGCACGGA-TTCGGTGCACGTTCAGACCAAT 714334 Query 245287 TCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCAT 245346 || || || |||||| || | ||| ||| |||||| || || || ||||| || Sbjct 714333 ACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTCAAT 714274 Query 245347 GCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGA 245406 |||||| |||||||| || || ||||| ||||| ||||| |||| ||| | | || Sbjct 714273 ACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGAGAGCTGAGGCTGGGGAGTACCCGC 714214 Query 245407 GTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTG 245466 ||||| || |||||| ||| ||||| ||| | |||||| | || ||| |||| Sbjct 714213 ATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTCGACATGAGGTTGTAAGTCTC 714154 Query 245467 GAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCA--CCTCATGAGGGTGTGC 245524 ||| | | || |||||||| || || ||| | ||| | ||||| ||||| Sbjct 714153 GAGGACACGCTCAATGTTGTCACCCCAGA--TGCCGACAGCAACACGCATGATCATGTGC 714096 Query 245525 T-GGGGCG-TC-TCGATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTC 245581 | |||||| || | || || || |||||| | |||||| ||||| || ||| Sbjct 714095 TGGGGGCGCTCAACAATCTTGCCATC---AATCTTGAGGAGGTAGGATCGCTCAAGAGTC 714039 Query 245582 TTGAACCCAAAGTA 245595 ||||| |||||||| Sbjct 714038 TTGAAGCCAAAGTA 714025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337984163280