Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq32 131 4e-25
seq54 105 2e-17
seq41 105 2e-17
seq4 91.5 3e-13
>seq32
Length=3227256
Score = 131 bits (144), Expect = 4e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || || || | || || || ||||| || |||||| |
Sbjct 1807629 CCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTG 1807688
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || ||||| || | ||| || || |||||||| || |||||||| | ||
Sbjct 1807689 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 1807748
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| |||||||| || |||| |||||||| || || | ||| |||||| ||
Sbjct 1807749 ATTCCTTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACC 1807808
Query 288427 TCGA-GCGTGATCGT-CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||| | ||||| || ||| || || |||||||||||||| || |||||
Sbjct 1807809 TCGAAGGGTGATGGTTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857
Score = 109 bits (120), Expect = 1e-18
Identities = 163/230 (71%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || ||||| | || || || || | || ||| || || || || |||||
Sbjct 1807399 TGACCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCA 1807458
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| ||| ||||| ||||| || | || || || || ||||| || ||||| || |
Sbjct 1807459 GAGAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTG-GTCGGG 1807517
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || ||||| || || | ||||| || || || | |||||| || ||
Sbjct 1807518 GGGATACCCTCCTTGTCCTGAATCTTGGACTTCACATTATCAATGGTATCGCTGGACTCG 1807577
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || || ||||||||||| || ||||||||
Sbjct 1807578 ACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACAAAGATCTGCAT 1807627
>seq54
Length=1261221
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178
|||||| | ||| ||| |||| || | | |||| ||||| ||| | ||||||||
Sbjct 1145370 GAGTTCCTGACTGAGGCTCTCCCCTGCGCCCTCCTCGGCATGAACGCCAACCTCATGAAG 1145311
Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238
|| || ||||| ||||| || || ||| || || || || || | ||||| || |||
Sbjct 1145310 CAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGTCGCCCTGGGCAACGAGAAGGTCTAC 1145251
Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298
|| || || ||||||| ||| ||||| || || || | || ||||| ||||||
Sbjct 1145250 AAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTC 1145191
Query 269299 TTCGAAAAGCGTGTCAGCGACTATCA 269324
||||| ||||||||| | ||||| ||
Sbjct 1145190 TTCGAGAAGCGTGTCGGTGACTACCA 1145165
>seq41
Length=1307349
Score = 105 bits (116), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||||| || || ||||| || ||||||
Sbjct 954327 CCACCACGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 954386
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || || ||||| || ||||| || || |||
Sbjct 954387 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGG---TCGGGG 954443
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || |||||||| || | || ||||| || || | ||| || ||
Sbjct 954444 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCC 954503
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| |||||||| || || ||||||||||| ||||||||
Sbjct 954504 ACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 954553
>seq4
Length=1115785
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| ||| || || || || || | || || || |||||||||
Sbjct 972054 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 972113
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||| || ||| ||| || || || || |||||||| || | || || ||
Sbjct 972114 AGTCGCTGCTG---ATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 972170
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || || || ||||| ||||| ||||| || ||||| ||||| |||
Sbjct 972171 TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 972230
Query 288463 AA 288464
||
Sbjct 972231 AA 972232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179652843224834
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |