Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq32 131 4e-25 seq54 105 2e-17 seq41 105 2e-17 seq4 91.5 3e-13 >seq32 Length=3227256 Score = 131 bits (144), Expect = 4e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | || || || ||||| || |||||| | Sbjct 1807629 CCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTG 1807688 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | ||| || || |||||||| || |||||||| | || Sbjct 1807689 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 1807748 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| |||||||| || |||| |||||||| || || | ||| |||||| || Sbjct 1807749 ATTCCTTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACC 1807808 Query 288427 TCGA-GCGTGATCGT-CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| | ||||| || ||| || || |||||||||||||| || ||||| Sbjct 1807809 TCGAAGGGTGATGGTTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | || || || || | || ||| || || || || ||||| Sbjct 1807399 TGACCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCA 1807458 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| ||||| || | || || || || ||||| || ||||| || | Sbjct 1807459 GAGAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTG-GTCGGG 1807517 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || ||||| || || | ||||| || || || | |||||| || || Sbjct 1807518 GGGATACCCTCCTTGTCCTGAATCTTGGACTTCACATTATCAATGGTATCGCTGGACTCG 1807577 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || ||||||||||| || |||||||| Sbjct 1807578 ACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACAAAGATCTGCAT 1807627 >seq54 Length=1261221 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178 |||||| | ||| ||| |||| || | | |||| ||||| ||| | |||||||| Sbjct 1145370 GAGTTCCTGACTGAGGCTCTCCCCTGCGCCCTCCTCGGCATGAACGCCAACCTCATGAAG 1145311 Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238 || || ||||| ||||| || || ||| || || || || || | ||||| || ||| Sbjct 1145310 CAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGTCGCCCTGGGCAACGAGAAGGTCTAC 1145251 Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298 || || || ||||||| ||| ||||| || || || | || ||||| |||||| Sbjct 1145250 AAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTC 1145191 Query 269299 TTCGAAAAGCGTGTCAGCGACTATCA 269324 ||||| ||||||||| | ||||| || Sbjct 1145190 TTCGAGAAGCGTGTCGGTGACTACCA 1145165 >seq41 Length=1307349 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||||| || || ||||| || |||||| Sbjct 954327 CCACCACGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 954386 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| || ||||| || || ||| Sbjct 954387 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGG---TCGGGG 954443 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | ||| || || Sbjct 954444 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCC 954503 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| || || ||||||||||| |||||||| Sbjct 954504 ACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 954553 >seq4 Length=1115785 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| || || || || || | || || || ||||||||| Sbjct 972054 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 972113 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || ||| ||| || || || || |||||||| || | || || || Sbjct 972114 AGTCGCTGCTG---ATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 972170 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| ||||| || ||||| ||||| ||| Sbjct 972171 TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 972230 Query 288463 AA 288464 || Sbjct 972231 AA 972232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652843224834