Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq41 122 9e-23
seq32 111 2e-19
seq4 93.3 5e-14
>seq41
Length=1307349
Score = 122 bits (134), Expect = 9e-23
Identities = 149/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
||||||||||| || || ||||| || ||| || || | || || ||||||||||||
Sbjct 954357 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 954416
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131
|| || || |||||||||||||||| || | || |||||||||| ||| || |||
Sbjct 954417 GCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 954476
Query 42132 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190
| ||| | | | |||||| || ||||| || | ||||| || || ||||| || ||
Sbjct 954477 A-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGT 954535
Query 42191 CTTTACAAAGATTTGCATTTT 42211
||| || ||||| ||||| ||
Sbjct 954536 CTTGACGAAGATCTGCATCTT 954556
>seq32
Length=3227256
Score = 111 bits (122), Expect = 2e-19
Identities = 142/192 (74%), Gaps = 3/192 (2%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| ||||| ||||| |||| || || || |||| || |||||||||||||| ||
Sbjct 1807438 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAG 1807497
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| |||||||||||||||| || | | |||||||||| ||| | || | || | |
Sbjct 1807498 ATAAGTCGCTGCTGGTCGG-GGGGATACCCTCCTTGTCC-TGAATCTTGGACTTCACATT 1807555
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | || ||||| || || || || | |||||||| || || || || ||||| ||
Sbjct 1807556 ATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGAC 1807615
Query 42197 AAAGATTTGCAT 42208
|||||| |||||
Sbjct 1807616 AAAGATCTGCAT 1807627
Score = 86.0 bits (94), Expect = 7e-12
Identities = 139/195 (71%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || ||||| || |||| || || ||||| || |||||
Sbjct 1807664 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 1807723
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| |||||||| ||||| | || | | ||||| ||| ||| | || | | |||
Sbjct 1807724 GATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCC-TGAATCTTCGACTTCACGT 1807782
Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCG-TGATGGTT-TTGCCCGTTAGCGTCTT 42193
| | |||||| ||||||||| |||| | |||||||| || || || || |||||
Sbjct 1807783 TATCGATTGTGTCGGACGATTCCACCTCGAAGGGTGATGGTTCTTTCCAGTGAGAGTCTT 1807842
Query 42194 TACAAAGATTTGCAT 42208
|| |||||||||||
Sbjct 1807843 GACGAAGATTTGCAT 1807857
>seq4
Length=1115785
Score = 93.3 bits (102), Expect = 5e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | ||||| || | || || |||||||| |||||||| |
Sbjct 972052 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 972111
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| ||||||||||| || | || | || |||||||||| ||| || |||| |
Sbjct 972112 TCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 972171
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||| || || || |||| |||||||| |||||||| || ||||| || |
Sbjct 972172 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 972231
Query 42199 A 42199
|
Sbjct 972232 A 972232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212100613520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |