Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq37 143 3e-29
seq32 113 4e-20
seq54 102 8e-17
seq41 98.7 1e-15
>seq37
Length=4018383
Score = 143 bits (158), Expect = 3e-29
Identities = 507/783 (65%), Gaps = 27/783 (3%)
Strand=Plus/Minus
Query 153383 CTCGTACGGCATGCGCAGCAGCACA-AAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441
|||| | ||||||||||| |||| || || ||||| |||||||||| ||||||||| |
Sbjct 715155 CTCGAAAGGCATGCGCAG-AGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACGCCAA 715097
Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501
| ||||| || | ||||||| | || | | ||| ||||| || ||| |
Sbjct 715096 TAGGTCGGTGTCGCATGTTGCTGTTGCGAGCTTCAGGAACGGGGTAGTGGTTCACATCAA 715037
Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561
| || |||| |||||||| || || | || | | | | || |||| ||| ||||
Sbjct 715036 TGATCCTGTTCAGGTTGCGAACGACAGTCTGTGTGACCTCGTGCAGCTTCTGGAAGTCAT 714977
Query 153562 AGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGG 153621
|| ||||| | | | | | ||| | ||| || || |||||||| |
Sbjct 714976 AGCAGGCCTCGTCATAGTTGATGAAAGAGGGAAGGGCGAGAGAGGCAAGGTTACAGACAG 714917
Query 153622 CCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681
| ||| || | | | | ||||| | |||||| | ||| |||||| || |||
Sbjct 714916 CAACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGG 714857
Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741
|||| || | ||| ||||| ||||| ||||| || ||| |||||||| | ||
Sbjct 714856 TACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGT 714797
Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798
|| |||||| || | |||| ||| | ||| || | ||| || ||
Sbjct 714796 TACCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAGAGC---TTCTGGGCCTTCATGG 714740
Query 153799 GCTGCCGA---TAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGC 153855
|| ||| | || | ||| |||| || ||||||||| ||| ||||| || |
Sbjct 714739 TCTTGCGACCCTTGCCGGCCT---TCTCATACTTCTCGTACAGAGCCTCGAACTCCTCAC 714683
Query 153856 CGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGG 153915
|||||||||||||||| |||||||||| | ||||||||||| | ||| | |||
Sbjct 714682 CGTAGCAGTCGGCGAGACCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCT 714623
Query 153916 CGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 153975
| ||| || |||||| ||||| || | |||||| || | | |||||| ||
Sbjct 714622 TCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAAGTCGCGAGCGC 714563
Query 153976 TGCAATCCTCCGCGCC---CATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGT 154032
| || ||| ||| | ||||| ||| | || | | ||| || ||||
Sbjct 714562 GGACCTCTTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAACTCAAAGACATCTGCGT 714506
Query 154033 GCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGT 154089
||||||| |||| ||||| ||| | ||||| ||| || || |||||||||||||
Sbjct 714505 GCCAGGGCTCAAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCCACCCTGATCGACGT 714446
Query 154090 GGCGCACCATATTGTTGAAGACGCGCACCAT--GGGTTCCAGGCCGCTTGCGGTGCCGTT 154147
|| | | ||||||||||| || | ||| |||| || ||| | | ||| |||||
Sbjct 714445 ATCGGGCAGTGTTGTTGAAGACACGAAGCATAGGGGTAACA--CCGTTGGAGGTACCGTT 714388
Query 154148 GGT 154150
|||
Sbjct 714387 GGT 714385
>seq32
Length=3227256
Score = 113 bits (124), Expect = 4e-20
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | ||| | || | | |||||||| || ||||||||||||||
Sbjct 1807629 CCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTG 1807688
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || |||||||||||| || |||| |||| || ||||||||||| |||||
Sbjct 1807689 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 1807748
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| || || ||| | || | || | | || | ||||||| ||| |||||
Sbjct 1807749 ATTCCTTCCTTATC-CTGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCAC 1807807
Query 138567 CTCG-ACCGTCAGCGTT-TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | ||| || ||||| ||||| || || || || |||||
Sbjct 1807808 CTCGAAGGGTGATGGTTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/228 (69%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | || | | | || ||||| ||||||||||||||
Sbjct 1807402 CCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAG 1807461
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| || || ||||| | | |||| || ||||| |||| ||| ||
Sbjct 1807462 AGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGT-CGGGGGG 1807520
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| | || | || | | || | ||| ||| | ||||| ||
Sbjct 1807521 ATACCCTCCTTGTC-CTGAATCTTGGACTTCACATTATCAATGGTATCGCTGGACTCGAC 1807579
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || || ||||| || ||||| ||||||||
Sbjct 1807580 CTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACAAAGATCTGCAT 1807627
>seq54
Length=1261221
Score = 102 bits (112), Expect = 8e-17
Identities = 334/517 (65%), Gaps = 19/517 (4%)
Strand=Plus/Minus
Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388
|| ||| | ||||| ||||| | ||||| || | |||||| || | | | | |
Sbjct 1145673 CCTTGCATCCGCAAGAAGGCCGACTGGGCTATCAGATGGATCCAGGACAAGGACTCTTCC 1145614
Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448
| || |||| | || |||||||| |||||||| | || || || ||||
Sbjct 1145613 TTTGCTCAGCGTCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTTT 1145554
Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508
|| ||||||| | | || | | || | |||||||| ||||| ||| |||||||
Sbjct 1145553 GCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAG 1145494
Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---ACTACAAG--- 52562
| || || || || || || || ||||| |||||||| |||||| ||| | |
Sbjct 1145493 CTCATCTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGCCTCCTCCACTCCCACCTC 1145434
Query 52563 -ACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621
| | |||| | | || | | | |||| | ||| ||| || || ||
Sbjct 1145433 AAGGGCCGTGCCAGCAA----------GCAGATCATCCAGGACATCATCACTGATGCCGT 1145384
Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681
| || || ||||||| | || | || || || || || || |||||||||||
Sbjct 1145383 CACCATTGAGCAGGAGTTCCTGACTGAGGCTCTCCCCTGCGCCCTCCTCGGCATGAACGC 1145324
Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741
| |||| ||||||||||||| || || || ||||| | || || |||||
Sbjct 1145323 CAACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGTCGCCCT-GGGCA 1145265
Query 52742 GCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800
| | ||| || ||| || ||| || || || || ||| | ||||| || || | |
Sbjct 1145264 ACGAGAAGGTCTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTG 1145205
Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||||||||||| ||||||||||| ||||| || ||
Sbjct 1145204 GCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 1145168
>seq41
Length=1307349
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || |||||||| || ||||| | | |
Sbjct 954362 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 954421
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || ||||| ||||| || || || || || ||||| ||| || || | |
Sbjct 954422 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 954481
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | |||||||| ||||||||||| | || | || || || || || || || ||
Sbjct 954482 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGAC 954541
Query 138603 AAAAATCTGCAT 138614
|| ||||||||
Sbjct 954542 GAAGATCTGCAT 954553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261761062160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |