Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq37 143 3e-29 seq32 113 4e-20 seq54 102 8e-17 seq41 98.7 1e-15 >seq37 Length=4018383 Score = 143 bits (158), Expect = 3e-29 Identities = 507/783 (65%), Gaps = 27/783 (3%) Strand=Plus/Minus Query 153383 CTCGTACGGCATGCGCAGCAGCACA-AAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 |||| | ||||||||||| |||| || || ||||| |||||||||| ||||||||| | Sbjct 715155 CTCGAAAGGCATGCGCAG-AGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACGCCAA 715097 Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 | ||||| || | ||||||| | || | | ||| ||||| || ||| | Sbjct 715096 TAGGTCGGTGTCGCATGTTGCTGTTGCGAGCTTCAGGAACGGGGTAGTGGTTCACATCAA 715037 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | || |||| |||||||| || || | || | | | | || |||| ||| |||| Sbjct 715036 TGATCCTGTTCAGGTTGCGAACGACAGTCTGTGTGACCTCGTGCAGCTTCTGGAAGTCAT 714977 Query 153562 AGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGG 153621 || ||||| | | | | | ||| | ||| || || |||||||| | Sbjct 714976 AGCAGGCCTCGTCATAGTTGATGAAAGAGGGAAGGGCGAGAGAGGCAAGGTTACAGACAG 714917 Query 153622 CCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 | ||| || | | | | ||||| | |||||| | ||| |||||| || ||| Sbjct 714916 CAACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGG 714857 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 |||| || | ||| ||||| ||||| ||||| || ||| |||||||| | || Sbjct 714856 TACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGT 714797 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798 || |||||| || | |||| ||| | ||| || | ||| || || Sbjct 714796 TACCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAGAGC---TTCTGGGCCTTCATGG 714740 Query 153799 GCTGCCGA---TAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGC 153855 || ||| | || | ||| |||| || ||||||||| ||| ||||| || | Sbjct 714739 TCTTGCGACCCTTGCCGGCCT---TCTCATACTTCTCGTACAGAGCCTCGAACTCCTCAC 714683 Query 153856 CGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGG 153915 |||||||||||||||| |||||||||| | ||||||||||| | ||| | ||| Sbjct 714682 CGTAGCAGTCGGCGAGACCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCT 714623 Query 153916 CGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 153975 | ||| || |||||| ||||| || | |||||| || | | |||||| || Sbjct 714622 TCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAAGTCGCGAGCGC 714563 Query 153976 TGCAATCCTCCGCGCC---CATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGT 154032 | || ||| ||| | ||||| ||| | || | | ||| || |||| Sbjct 714562 GGACCTCTTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAACTCAAAGACATCTGCGT 714506 Query 154033 GCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGT 154089 ||||||| |||| ||||| ||| | ||||| ||| || || ||||||||||||| Sbjct 714505 GCCAGGGCTCAAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCCACCCTGATCGACGT 714446 Query 154090 GGCGCACCATATTGTTGAAGACGCGCACCAT--GGGTTCCAGGCCGCTTGCGGTGCCGTT 154147 || | | ||||||||||| || | ||| |||| || ||| | | ||| ||||| Sbjct 714445 ATCGGGCAGTGTTGTTGAAGACACGAAGCATAGGGGTAACA--CCGTTGGAGGTACCGTT 714388 Query 154148 GGT 154150 ||| Sbjct 714387 GGT 714385 >seq32 Length=3227256 Score = 113 bits (124), Expect = 4e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | || | | |||||||| || |||||||||||||| Sbjct 1807629 CCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTG 1807688 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||||||| || |||| |||| || ||||||||||| ||||| Sbjct 1807689 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 1807748 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || | || | | || | ||||||| ||| ||||| Sbjct 1807749 ATTCCTTCCTTATC-CTGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCAC 1807807 Query 138567 CTCG-ACCGTCAGCGTT-TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||| || ||||| ||||| || || || || ||||| Sbjct 1807808 CTCGAAGGGTGATGGTTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | || ||||| |||||||||||||| Sbjct 1807402 CCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAG 1807461 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || ||||| | | |||| || ||||| |||| ||| || Sbjct 1807462 AGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGT-CGGGGGG 1807520 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| | || | || | | || | ||| ||| | ||||| || Sbjct 1807521 ATACCCTCCTTGTC-CTGAATCTTGGACTTCACATTATCAATGGTATCGCTGGACTCGAC 1807579 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || ||||| || ||||| |||||||| Sbjct 1807580 CTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACAAAGATCTGCAT 1807627 >seq54 Length=1261221 Score = 102 bits (112), Expect = 8e-17 Identities = 334/517 (65%), Gaps = 19/517 (4%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 || ||| | ||||| ||||| | ||||| || | |||||| || | | | | | Sbjct 1145673 CCTTGCATCCGCAAGAAGGCCGACTGGGCTATCAGATGGATCCAGGACAAGGACTCTTCC 1145614 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | || |||| | || |||||||| |||||||| | || || || |||| Sbjct 1145613 TTTGCTCAGCGTCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTTT 1145554 Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 || ||||||| | | || | | || | |||||||| ||||| ||| ||||||| Sbjct 1145553 GCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAG 1145494 Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---ACTACAAG--- 52562 | || || || || || || || ||||| |||||||| |||||| ||| | | Sbjct 1145493 CTCATCTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGCCTCCTCCACTCCCACCTC 1145434 Query 52563 -ACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 | | |||| | | || | | | |||| | ||| ||| || || || Sbjct 1145433 AAGGGCCGTGCCAGCAA----------GCAGATCATCCAGGACATCATCACTGATGCCGT 1145384 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 | || || ||||||| | || | || || || || || || ||||||||||| Sbjct 1145383 CACCATTGAGCAGGAGTTCCTGACTGAGGCTCTCCCCTGCGCCCTCCTCGGCATGAACGC 1145324 Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741 | |||| ||||||||||||| || || || ||||| | || || ||||| Sbjct 1145323 CAACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGTCGCCCT-GGGCA 1145265 Query 52742 GCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 | | ||| || ||| || ||| || || || || ||| | ||||| || || | | Sbjct 1145264 ACGAGAAGGTCTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTG 1145205 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||| ||||||||||| ||||| || || Sbjct 1145204 GCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 1145168 >seq41 Length=1307349 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||||| || ||||| | | | Sbjct 954362 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 954421 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 954422 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 954481 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||| | || | || || || || || || || || Sbjct 954482 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGAC 954541 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 954542 GAAGATCTGCAT 954553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261761062160