Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq37 134 1e-26
seq41 111 1e-19
seq4 105 6e-18
seq32 95.1 1e-14
>seq37
Length=4018383
Score = 134 bits (148), Expect = 1e-26
Identities = 847/1337 (63%), Gaps = 60/1337 (4%)
Strand=Plus/Minus
Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGT---CTATCATG 145908
|| ||||| ||| |||||||||||| | | | |||||||| ||||| | | | | |
Sbjct 715721 TTGAGAGACTGGGACTGATCAATGAAGGCACCTCGGTCGGCTGCCATCTGGACGACCTGG 715662
Query 145909 CACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCG 145968
| || || ||| ||||| |||| || ||||| ||||||| | ||| || | |
Sbjct 715661 CGCTGGGA---AATCTCCCACACGGTCTTGTAGAGAGCCTTGACCTCAGCGGGGATGTTG 715605
Query 145969 TCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAA 146028
|||||||| | || || || || || | ||| ||| || |||| | |
Sbjct 715604 GGGATGTTCTGGATGGAACCGTTCTCAGCAATGATTCGGTTCTTCA----TGGAATCCGA 715549
Query 146029 ----ATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCC 146084
| | || || ||||| |||||| | | |||| || ||||| ||||||||
Sbjct 715548 CCACAGGCCCATATCGACGAGATCCTTGAGCAACCAGGGGTTAACGACCTGGAACTCGCC 715489
Query 146085 GGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACC 146144
||||| || || | | | || | |||| |||| | |||||||| |||||||||||||
Sbjct 715488 AGCGAGGACACGACGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTACC 715429
Query 146145 GAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCC 146204
|| ||||||| || | || || |||||| || | ||||| | ||| | ||
Sbjct 715428 CAGGATCTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGGGTACC 715369
Query 146205 GTG-TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGA 146263
|| || ||| | || |||| || ||| | ||| | |||| | ||| | |
Sbjct 715368 ATGCTCCTTG-ACCTGCTCCCTGAGAGACTCCCAGTCCCAGA---GATCAGAGGGCTTCA 715313
Query 146264 TATTGTAGTTGTCGTAATGCATAGT-GCCGCGGA-ACAGG-GGGCTATTCTCGTACGATT 146320
|| | ||||| | || | | | || | || |||| | || || | | |
Sbjct 715312 CGTTCCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGAGAGC---CCTTGAAGGTAG 715256
Query 146321 CATAAGGACCGTCGATCTTGGCCAGTTCGCA-GCTAGCTTCCAGAGCCGAAAAGTATATG 146379
|||||||| || ||||||||| | ||| | ||| |||||| | | ||| |||
Sbjct 715255 AGTAAGGACCCTCCTCCTTGGCCAGCT-GCACGGAAGCAGTCAGAGCAGCATGGTAGATG 715197
Query 146380 GTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAG 146438
||||| |||| | ||| | |||| | ||||| ||| | || || ||
Sbjct 715196 GTCTCAAAGATCTGCTTGTTCA-GCTCTCGAGCCTCAGGAGACTCGAAAGGCATGCGCAG 715138
Query 146439 AAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTT 146498
| | || || ||||| |||||||| | ||||| |||| || |||||| | ||||
Sbjct 715137 AGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACGCCAATAGGTCGGTGTCGCATGTT 715078
Query 146499 ACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACG 146558
||||| ||| | | | ||| |||||||| || |||||| |||| || || ||
Sbjct 715077 GCTGTTGCGAGCTTCAGGAACGGGGTAGTGGTTCACATCAATGATCCTGTTCAGGTTGCG 715018
Query 146559 CACGACAATTT--------TCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTT 146610
|||||| | | |||| | | ||| | | | ||||| || | | ||
Sbjct 715017 AACGACAGTCTGTGTGACCTCGTGCA--GCTTCTGGAAGTCATAG-CA---GGCCTCGTC 714964
Query 146611 TTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCC 146670
|| ||||| | | | | ||||| |||||| | |||||| || ||| ||| ||
Sbjct 714963 ATA--GTTGATGAAAGAGGGAAGGGCGAGAGAGGCAAGGTTACAGACAGCAACCTCATCA 714906
Query 146671 TTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAttt 146730
| | || |||| | ||||| | ||| |||||| || ||| | |||| ||
Sbjct 714905 GGGGCACAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTC 714846
Query 146731 ttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTT 146787
|| ||||| || ||| ||||||| | ||||||||||||||| | || || ||
Sbjct 714845 TTCTGGTTGCT---CTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTC 714789
Query 146788 TCGACATTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTA 146846
||| | | ||||| |||| | | || | | ||||| | || | ||||| || |
Sbjct 714788 TCGGTCTGAGCCTCGAGGATG--GCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCG-A 714732
Query 146847 CAGTT--TATTCTTTTCGTATTTCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCG 146904
| || ||| || || |||||||||| || || |||||| ||||
Sbjct 714731 CCCTTGCCGGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCG 714672
Query 146905 AGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGT 146964
||| |||||| ||| |||||||| | ||| | ||| || |||| || || ||
Sbjct 714671 GCGAGACCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCTTCTCGACACGC 714612
Query 146965 TCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCG 147024
| ||| || | |||||||||||| || |||| | |||||||||||| | | || ||
Sbjct 714611 TTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAAGTCGCGAGCGCGGACCTCTTCC 714552
Query 147025 GAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACG 147084
||| ||| | || || |||| || | | || | ||||| ||||| | |
Sbjct 714551 TTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGG 714492
Query 147085 TATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTA 147141
|| ||| | || || |||| || || ||||||||||||| || | ||||
Sbjct 714491 TAGATGGCAAAAGCACCAGGTCGCTTGTTGCCACCCTGATCGACGTATCGGGCAGTGTTG 714432
Query 147142 TTGAAGACTCGTAACAT 147158
|||||||| || | |||
Sbjct 714431 TTGAAGACACGAAGCAT 714415
>seq41
Length=1307349
Score = 111 bits (122), Expect = 1e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| |||| || ||||| ||| || ||||| || ||||| |
Sbjct 954362 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 954421
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
||| | ||||||||| ||||| || ||||||||||||||| ||| || ||||| |||
Sbjct 954422 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 954481
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
| |||| |||||| | | ||| || || | ||| | || || || || || || || |
Sbjct 954482 G-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGA 954540
Query 127101 CAAAAATCTGCAT 127113
| || ||||||||
Sbjct 954541 CGAAGATCTGCAT 954553
>seq4
Length=1115785
Score = 105 bits (116), Expect = 6e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || |||||| |||||| |||||||||||| || || |||||||||||
Sbjct 972086 ATCCTCAAGCTGCTTGCCAGCGAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTT 972145
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | || | |||||||| |||||| |||| ||| |
Sbjct 972146 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 972205
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|| ||||| ||||| || || || |||
Sbjct 972206 GGTCTTGCCCGTCAGGGTCTTCACGAAA 972233
>seq32
Length=3227256
Score = 95.1 bits (104), Expect = 1e-14
Identities = 126/175 (72%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||||||| | ||||| ||| || ||||| || ||
Sbjct 1808099 GTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 1808158
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| ||||||||||| ||||| ||||||||||||||| || ||| ||||
Sbjct 1808159 GCGAAAATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 1808218
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| | |||| ||| || | ||| || |||| ||| | || ||||| ||||
Sbjct 1808219 ACATTGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCA 1808273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500187792720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |