Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq37 134 1e-26 seq41 111 1e-19 seq4 105 6e-18 seq32 95.1 1e-14 >seq37 Length=4018383 Score = 134 bits (148), Expect = 1e-26 Identities = 847/1337 (63%), Gaps = 60/1337 (4%) Strand=Plus/Minus Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGT---CTATCATG 145908 || ||||| ||| |||||||||||| | | | |||||||| ||||| | | | | | Sbjct 715721 TTGAGAGACTGGGACTGATCAATGAAGGCACCTCGGTCGGCTGCCATCTGGACGACCTGG 715662 Query 145909 CACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCG 145968 | || || ||| ||||| |||| || ||||| ||||||| | ||| || | | Sbjct 715661 CGCTGGGA---AATCTCCCACACGGTCTTGTAGAGAGCCTTGACCTCAGCGGGGATGTTG 715605 Query 145969 TCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAA 146028 |||||||| | || || || || || | ||| ||| || |||| | | Sbjct 715604 GGGATGTTCTGGATGGAACCGTTCTCAGCAATGATTCGGTTCTTCA----TGGAATCCGA 715549 Query 146029 ----ATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCC 146084 | | || || ||||| |||||| | | |||| || ||||| |||||||| Sbjct 715548 CCACAGGCCCATATCGACGAGATCCTTGAGCAACCAGGGGTTAACGACCTGGAACTCGCC 715489 Query 146085 GGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACC 146144 ||||| || || | | | || | |||| |||| | |||||||| ||||||||||||| Sbjct 715488 AGCGAGGACACGACGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTACC 715429 Query 146145 GAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCC 146204 || ||||||| || | || || |||||| || | ||||| | ||| | || Sbjct 715428 CAGGATCTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGGGTACC 715369 Query 146205 GTG-TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGA 146263 || || ||| | || |||| || ||| | ||| | |||| | ||| | | Sbjct 715368 ATGCTCCTTG-ACCTGCTCCCTGAGAGACTCCCAGTCCCAGA---GATCAGAGGGCTTCA 715313 Query 146264 TATTGTAGTTGTCGTAATGCATAGT-GCCGCGGA-ACAGG-GGGCTATTCTCGTACGATT 146320 || | ||||| | || | | | || | || |||| | || || | | | Sbjct 715312 CGTTCCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGAGAGC---CCTTGAAGGTAG 715256 Query 146321 CATAAGGACCGTCGATCTTGGCCAGTTCGCA-GCTAGCTTCCAGAGCCGAAAAGTATATG 146379 |||||||| || ||||||||| | ||| | ||| |||||| | | ||| ||| Sbjct 715255 AGTAAGGACCCTCCTCCTTGGCCAGCT-GCACGGAAGCAGTCAGAGCAGCATGGTAGATG 715197 Query 146380 GTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAG 146438 ||||| |||| | ||| | |||| | ||||| ||| | || || || Sbjct 715196 GTCTCAAAGATCTGCTTGTTCA-GCTCTCGAGCCTCAGGAGACTCGAAAGGCATGCGCAG 715138 Query 146439 AAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTT 146498 | | || || ||||| |||||||| | ||||| |||| || |||||| | |||| Sbjct 715137 AGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACGCCAATAGGTCGGTGTCGCATGTT 715078 Query 146499 ACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACG 146558 ||||| ||| | | | ||| |||||||| || |||||| |||| || || || Sbjct 715077 GCTGTTGCGAGCTTCAGGAACGGGGTAGTGGTTCACATCAATGATCCTGTTCAGGTTGCG 715018 Query 146559 CACGACAATTT--------TCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTT 146610 |||||| | | |||| | | ||| | | | ||||| || | | || Sbjct 715017 AACGACAGTCTGTGTGACCTCGTGCA--GCTTCTGGAAGTCATAG-CA---GGCCTCGTC 714964 Query 146611 TTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCC 146670 || ||||| | | | | ||||| |||||| | |||||| || ||| ||| || Sbjct 714963 ATA--GTTGATGAAAGAGGGAAGGGCGAGAGAGGCAAGGTTACAGACAGCAACCTCATCA 714906 Query 146671 TTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAttt 146730 | | || |||| | ||||| | ||| |||||| || ||| | |||| || Sbjct 714905 GGGGCACAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTC 714846 Query 146731 ttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTT 146787 || ||||| || ||| ||||||| | ||||||||||||||| | || || || Sbjct 714845 TTCTGGTTGCT---CTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTC 714789 Query 146788 TCGACATTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTA 146846 ||| | | ||||| |||| | | || | | ||||| | || | ||||| || | Sbjct 714788 TCGGTCTGAGCCTCGAGGATG--GCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCG-A 714732 Query 146847 CAGTT--TATTCTTTTCGTATTTCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCG 146904 | || ||| || || |||||||||| || || |||||| |||| Sbjct 714731 CCCTTGCCGGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCG 714672 Query 146905 AGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGT 146964 ||| |||||| ||| |||||||| | ||| | ||| || |||| || || || Sbjct 714671 GCGAGACCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCTTCTCGACACGC 714612 Query 146965 TCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCG 147024 | ||| || | |||||||||||| || |||| | |||||||||||| | | || || Sbjct 714611 TTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAAGTCGCGAGCGCGGACCTCTTCC 714552 Query 147025 GAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACG 147084 ||| ||| | || || |||| || | | || | ||||| ||||| | | Sbjct 714551 TTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGG 714492 Query 147085 TATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTA 147141 || ||| | || || |||| || || ||||||||||||| || | |||| Sbjct 714491 TAGATGGCAAAAGCACCAGGTCGCTTGTTGCCACCCTGATCGACGTATCGGGCAGTGTTG 714432 Query 147142 TTGAAGACTCGTAACAT 147158 |||||||| || | ||| Sbjct 714431 TTGAAGACACGAAGCAT 714415 >seq41 Length=1307349 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| |||| || ||||| ||| || ||||| || ||||| | Sbjct 954362 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 954421 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | ||||||||| ||||| || ||||||||||||||| ||| || ||||| ||| Sbjct 954422 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 954481 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| |||||| | | ||| || || | ||| | || || || || || || || | Sbjct 954482 G-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGA 954540 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 954541 CGAAGATCTGCAT 954553 >seq4 Length=1115785 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||| |||||||||||| || || ||||||||||| Sbjct 972086 ATCCTCAAGCTGCTTGCCAGCGAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTT 972145 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | || | |||||||| |||||| |||| ||| | Sbjct 972146 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 972205 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 972206 GGTCTTGCCCGTCAGGGTCTTCACGAAA 972233 >seq32 Length=3227256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | ||||| ||| || ||||| || || Sbjct 1808099 GTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 1808158 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| ||||||||||| ||||| ||||||||||||||| || ||| |||| Sbjct 1808159 GCGAAAATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 1808218 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | | |||| ||| || | ||| || |||| ||| | || ||||| |||| Sbjct 1808219 ACATTGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCA 1808273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500187792720