Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq37 206 3e-48 seq54 181 1e-40 >seq37 Length=4018383 Score = 206 bits (228), Expect = 3e-48 Identities = 892/1388 (64%), Gaps = 62/1388 (4%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||||||||| || |||| | ||| ||||||||||| |||||||| || | Sbjct 715846 TGAACTGAATGGGAGCAGCGGCAGCCTGCGTTCGCAGGTAGTACATGCCCGTCTTCAGAC 715787 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | |||||||| | | ||||| || | |||| | || || | |||| Sbjct 715786 CGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGGTCCTTCATGT 715727 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||| | | ||||| ||||| |||||| || || || || ||||| | | | Sbjct 715726 GGATGTTGAGAGACTGGGACTGATCAATGAAGGCACCTCGGTCGGCTGCCATCTGGACGA 715667 Query 115706 CATCCTTCATCTTG---ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA 115762 | || || | || |||||||| || ||||||| ||| | ||| | |||| Sbjct 715666 C---CTGGCGCTGGGAAATCTCCCACACGGTCTTGTAGAGAGCCTTGACCTCAGCGGGGA 715610 Query 115763 TATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCAT---AT 115816 | | ||| || ||||| || ||| || | |||| | | |||||| || Sbjct 715609 TGTTGGGGATGTTCTGGATGGA---ACCGTTCTCAGCAATGATTCGGTTCTTCATGGAAT 715553 Query 115817 CCTTTGACCAGAGACCAATCTTCTTGAGATCCT----CCACGAGGTGCTTATTGACAACA 115872 || ||||| || || || | |||||||| | || ||| | || || || Sbjct 715552 CC---GACCACAGGCCCATATCGACGAGATCCTTGAGCAACCAGGGG----TTAACGACC 715500 Query 115873 ACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCAC 115932 ||||| || |||||| || | | | |||||||||| ||||| ||||| |||||| Sbjct 715499 TGGAACTCGCCAGCGAGGACACGACGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCAC 715440 Query 115933 TCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTG 115992 || |||||||||| ||| || | ||| ||| ||||||||||| || | || || ||| Sbjct 715439 TCGTTGTTACCCAGGATCTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGCAGCAGACTG 715380 Query 115993 TTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGC-TT 116051 |||||| ||| | || | | | ||| |||| | |||||||| || || | Sbjct 715379 TTGCGGGTACCATGCTCCTTGACCTGCTCCCTGAGAGACTCCCAGTCCCAG-AGATCAGA 715321 Query 116052 TGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAA 116111 | || | | | |||||| || |||||||| ||||| | || || || || |||| || Sbjct 715320 GGGCTTCACGTTCCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGAGAGCCCTTGAA 715261 Query 116112 TGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTG 116168 || || || ||||| ||| |||| | |||| || || || || || Sbjct 715260 GGTAGAGTAAGGACCCTCCTCCTTGGCCAGCTGCACGGA---AGCAGTCAGAGCAGCATG 715204 Query 116169 ATACATTGTCTCAAAAATGCGAGCATTCATTGC-CTTG-GCCTCGTCGGAATCAAACGCG 116226 || || |||||||| || | |||| || || | ||||| || || || | Sbjct 715203 GTAGATGGTCTCAAAGATCTGCTTGTTCA--GCTCTCGAGCCTCAGGAGACTCGAAAGGC 715146 Query 116227 AGACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATG 116285 | | ||| | || || |||| || ||||| |||||||||| |||||| || || || Sbjct 715145 ATGC-GCAGAGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACGCCAATAGGTCGGTG 715087 Query 116286 TCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATT 116345 || ||| || || ||||| ||||| || ||| ||| || | ||| || Sbjct 715086 TCGCATGTTGCTGTTGCGAGCTTCAGGAACGGGGTAGTGGTTCACATCAATGATCCTGTT 715027 Query 116346 TAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT 116405 || || |||| || ||||| || || ||||| | | | ||| | || | Sbjct 715026 CAGGTTGCGAACGACAGTCTGTGTGACCTCGTGCAGCTTCTGGAAGTCATA---GCAGGC 714970 Query 116406 CTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 116462 ||| ||| |||| | |||||||||| || || || ||||| |||| ||| Sbjct 714969 CTCGTCATAGTTGATGAAAGAGGGAAGGGCGAGAGAGGCAAGGTTACAGACAGCAACCTC 714910 Query 116463 ATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAA 116522 ||| || |||||| || || || || |||| || || || |||||| |||| Sbjct 714909 ATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAG 714850 Query 116523 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGT 116582 |||||| || || ||| ||| || ||||||||||||||| | || | || || Sbjct 714849 GTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGT 714790 Query 116583 CTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG 116641 ||| || || | || ||| || || | ||| | | || | ||| || ||| ||| Sbjct 714789 CTCGGTCTGAGCCTCGAGGATGGCATACCAGAGCTTCTG-GGCCTTCA---TGGTCTTG- 714735 Query 116642 CTCGCCCCT------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG 116695 || |||| ||| ||| ||||| ||| || ||||| ||||| ||| || || Sbjct 714734 --CGACCCTTGCCGGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCA-CCGTAG 714678 Query 116696 C-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCA 116754 | || | ||| || || || | ||||| | |||| ||| | ||| || ||| Sbjct 714677 CAGTCGGCGAGACCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCTTCTCG 714618 Query 116755 ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT 116814 || |||||||||||||| || || |||||||| ||| ||| | || ||| ||| | Sbjct 714617 ACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAAGTCGCGAGCGCGGACC 714558 Query 116815 TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGT 116874 ||||| | || || || |||| || | || || | || ||| |||||||| || Sbjct 714557 TCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGC 714498 Query 116875 TCCAGGTA 116882 || ||||| Sbjct 714497 TCAAGGTA 714490 >seq54 Length=1261221 Score = 181 bits (200), Expect = 1e-40 Identities = 539/818 (66%), Gaps = 25/818 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 1145167 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCAT 1145226 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| || || | | | |||| |||| | |||| Sbjct 1145227 GAAGTCGAAGGGGTTGGCAGACTTGTAGACCTTCTCGTTG----CCCAGGGCGAC-GAGG 1145281 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 ||||| || | |||| |||| ||||||| ||| | | |||||| |||| |||| Sbjct 1145282 AGACGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCGAGGAGG 1145341 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || ||||| || || | |||| ||| ||||||| || || || | |||| Sbjct 1145342 GCGCAGGGGAGAGCCTCAGTCAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATG 1145401 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | | | || ||| || ||| Sbjct 1145402 TCCTGGATGATCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CAG-GCA 1145458 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||| ||||| |||||||| || || |||||| |||||| ||| Sbjct 1145459 AAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 1145518 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | | ||| | ||| ||||||||| ||| Sbjct 1145519 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGATACCC 1145578 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCA 127701 || || ||||| |||| ||||||| |||||||| | | | |||| | | ||| Sbjct 1145579 TCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGATCCA 1145637 Query 127702 CTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 | || ||||| | ||||| || ||| || |||| ||||| || || | ||||| Sbjct 1145638 TCTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGAAGAG 1145697 Query 127762 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 127821 | | | || || || |||||||| | || ||||| || || || ||| Sbjct 1145698 ATAGGTTCGCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGA 1145757 Query 127822 GTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 127880 ||||| | | ||| || | ||| | ||||||| | || || ||| ||||| | Sbjct 1145758 GTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGAA 1145816 Query 127881 CCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 127939 |||| | || ||| | | | | |||||| || || || || || | || || Sbjct 1145817 CCTC-GCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGAGGCGGCGAAG 1145875 Query 127940 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCG 127996 || || ||||| | ||||| ||| || | | ||| || | ||||||||| Sbjct 1145876 AAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGTTGTTCCAGTCG 1145935 Query 127997 TCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 | ||||||||| || ||||| | |||||| |||||||| Sbjct 1145936 TGGAGATCCTTGGACAGATCAATCTCCTCGGCAGTCCA 1145973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506410109480